Abstract:Complete geometry optimizations were carried out using density functional theory to study potential
energy surfaces for the insertion of germylene into C−H bonds of methane. The GeXY + CH4 (GeXY =
GeH2, GeCH2, GeH(CH3), Ge(CH3)2, GeHF, GeF2, GeHCl, GeCl2, GeHBr, and GeBr2) systems are the
subject of the present study. All the stationary points were determined at the B3LYP/6-311G* level of theory.
Our theoretical findings suggest that the computed structures of germylenes are in good agreement with the
availab… Show more
“…The relativistic effective core potential (ECP) basis set of Lanl2dz was used on the iodine atoms, and the 6-311++G(d,p) and aug-cc-pVTZ were used on the other atoms. These methods and basis sets have recently been shown to adequately describe noncovalent interaction systems [13][14][15]. Thus they are reliable for the purpose of our study.…”
Section: Computational Detailsmentioning
confidence: 87%
“…optimization and transition state calculations [13], and the MP2 method has been used successfully to study weak interactions [15]. The optimized geometric configurations on the potential surfaces of the monomers and CH 3 ···I-Y(Y = BH 2 , H, CH 3 , C 2 H 3 , CCH, CN and NC) complexes are shown in Figure 2, and some important structural parameters obtained at the B3LYP/6-311++G** (in regular type) and MP2/aug-cc-pVTZ (in italics) computational levels are also shown.…”
Section: Geometric Configuration and Frequency Analysismentioning
Iodine-involved single-electron halogen bonds (SEXBs) weak interactions in the systems of CH 3 ···I-Y(Y = BH 2 , H, CH 3 , CH==CH 2 , C≡CH, CN, NC) were investigated for the first time using B3LYP/6-311++G(d,p) and MP2/aug-cc-pVTZ computational levels (the relativistic effective core potential basis set of Lanl2dz was used on iodine atom). The interaction energies between two moieties with basis set super-position error corrections for the seven complexes are −0.57, −1.36, −3.80, −2.17, −4.49, −6.33 and −8.64 kJ mol −1 (MP2/aug-cc-pVTZ ), respectively, which shows that SEXBs interactions are all weak. Natural bond orbital theory analysis revealed that charges flow from CH 3 to the I-Y moiety. The total amount of natural bond orbital charge transfer (∆ NC ) from the CH 3 radical to I-Y increases in the order CH 3 ···IBH 2 CH 3 ···IH ≈ CH 3 ···ICH 3 ≈ CH 3 ···IC 2 H 3 CH 3 ···ICCH CH 3 ···ICN CH 3 ···INC. Atoms-in-molecules theory was used to investigate the topological properties of the bond critical points in the seven SEXB structures. Figure 1. The singleelectron halogen-bond (SEXB) interaction is one of these single-electron noncovalent interactions. However, only the single-electron bromine-bond has been studied [10][11][12], and neither experimental nor theoretical studies of the other SEXBs involving iodine have been reported. It is known that the iodine atom has more polarity and distortion than bromine atom. Thus iodine would be more suitable than bromine atom as an electron acceptor in SEXB systems. Based on these ideas, we are interested in whether there are any iodine-involved SEXB interactions, and how the interactions take place. We consider a particular set of molecules
“…The relativistic effective core potential (ECP) basis set of Lanl2dz was used on the iodine atoms, and the 6-311++G(d,p) and aug-cc-pVTZ were used on the other atoms. These methods and basis sets have recently been shown to adequately describe noncovalent interaction systems [13][14][15]. Thus they are reliable for the purpose of our study.…”
Section: Computational Detailsmentioning
confidence: 87%
“…optimization and transition state calculations [13], and the MP2 method has been used successfully to study weak interactions [15]. The optimized geometric configurations on the potential surfaces of the monomers and CH 3 ···I-Y(Y = BH 2 , H, CH 3 , C 2 H 3 , CCH, CN and NC) complexes are shown in Figure 2, and some important structural parameters obtained at the B3LYP/6-311++G** (in regular type) and MP2/aug-cc-pVTZ (in italics) computational levels are also shown.…”
Section: Geometric Configuration and Frequency Analysismentioning
Iodine-involved single-electron halogen bonds (SEXBs) weak interactions in the systems of CH 3 ···I-Y(Y = BH 2 , H, CH 3 , CH==CH 2 , C≡CH, CN, NC) were investigated for the first time using B3LYP/6-311++G(d,p) and MP2/aug-cc-pVTZ computational levels (the relativistic effective core potential basis set of Lanl2dz was used on iodine atom). The interaction energies between two moieties with basis set super-position error corrections for the seven complexes are −0.57, −1.36, −3.80, −2.17, −4.49, −6.33 and −8.64 kJ mol −1 (MP2/aug-cc-pVTZ ), respectively, which shows that SEXBs interactions are all weak. Natural bond orbital theory analysis revealed that charges flow from CH 3 to the I-Y moiety. The total amount of natural bond orbital charge transfer (∆ NC ) from the CH 3 radical to I-Y increases in the order CH 3 ···IBH 2 CH 3 ···IH ≈ CH 3 ···ICH 3 ≈ CH 3 ···IC 2 H 3 CH 3 ···ICCH CH 3 ···ICN CH 3 ···INC. Atoms-in-molecules theory was used to investigate the topological properties of the bond critical points in the seven SEXB structures. Figure 1. The singleelectron halogen-bond (SEXB) interaction is one of these single-electron noncovalent interactions. However, only the single-electron bromine-bond has been studied [10][11][12], and neither experimental nor theoretical studies of the other SEXBs involving iodine have been reported. It is known that the iodine atom has more polarity and distortion than bromine atom. Thus iodine would be more suitable than bromine atom as an electron acceptor in SEXB systems. Based on these ideas, we are interested in whether there are any iodine-involved SEXB interactions, and how the interactions take place. We consider a particular set of molecules
“…27 The geometries of reactants, intermediates, transition states and products were optimized at the DFT-B3LYP/6-311++G** level. [28][29][30][31] The harmonic vibration frequencies obtained at the corresponding level were used to characterize the stationary points and first-order saddle points. The intrinsic reaction coordinate (IRC) calculation was used to track minimum energy paths from transition structures to stationary points.…”
publicado na web em 15/08/2017We presented a theoretical study on the detailed reaction mechanism and kinetics of the HNCS molecule with the OH -. The barrierless minimum energy path and the most favorable entrance channel have been determined by study the thermodynamic and kinetic characters of the channel with low energy barrier. The B3LYP/6-311++G** method was employed for all the geometrical optimizations and a multi-level extrapolation method based on the G3 energies was employed for further energy refinements. In addition, the analysis of the combining interaction between hydroxide ion and HNCS was performed by natural bond orbitals (NBO) analysis. The calculation results indicated that the reaction of OH -with HNCS had four channels, and the channel of H-atom in HNCS direct extraction to OH -(OH -+HNCS→IM1→TS3→IM4→P2(SCN -+H 2 O)) in singlet state was the main channel with the low potential energy and high equilibrium constant and reaction rate constant. SCN -and H 2 O were main products.Keywords: hydroxide ion; isothiocyanic acid; mechanism; equilibrium constant
INTRODUCTIONThe problem of the severe air pollution in developing countries has caused wide public concern over the recent years, heavy power plant smoke and car emissions, mainly in the form of sulfate, organic, nitric acid and particles, have always been a threat to the global public health. In the meanwhile, as important intermediates of sulfur-containing fuel combustion process, HNCS and its derived free radical NCS can participate in the process of removal the toxic NO 4 compounds from rapid combustion exhaust gas too. [1][2][3][4][5][6] Due to its important role, the theoretical study on the reaction mechanism of HNCS with small molecules by quantum chemistry calculation also become the focus of the chemical workers' research. [7][8][9][10][11][12][13][14][15][16][17][18][19] Because its oxidation ability is very strong, hydroxide ion (OH -) is one of the key intermediates in the interstellar environment and a large number of combustion reaction, not only represents a very important role that OH -can oxidized volatile organic compounds in the troposphere gas, 20 but also plays an important role in atmospheric chemistry where it is the primary process responsible for removal of the H 2 CO pollutant.21-25 Molecular anions play an important role in the chemistry of the interstellar medium, of carbon stars , and the Earth' s ionosphere. One such species is the hydroxide ion. Madura and Jorgensen applied ab initio calculation to discuss the addition of hydroxyl anion to the aldehydic carbon atom. 26 Herein, we used the density functional theory (DFT) to explore the reaction mechanism of OH -with HNCS, We hope our work might provide theoretical guidance to control NO x substance-related air pollution effectively.
CALCULATION METHODSAll calculations were performed with the Gaussian 03 package. 27 The geometries of reactants, intermediates, transition states and products were optimized at the DFT-B3LYP/6-311++G** level.
28-31The harmonic vibration ...
“…32 Geometry optimization at the DFT-B3LYP/6-311++G** level [33][34][35][36] is used to obtain geometries of reactants, intermediates, transition states and products. The harmonic vibration frequencies are also obtained at the corresponding level to characterize the stationary points as local minima or first-order saddle points.…”
The reaction mechanism of SiF2 radical with HNCO has been investigated by the B3LYP method of density functional theory(DFT), while the geometries and harmonic vibration frequencies of reactants, intermediates, transition states and products have been calculated at the B3LYP/6-311++G** level. To obtain more precise energy result, stationary point energies were calculated at the CCSD(T)/6-311++G**//B3LYP/6-311++G** level. SiF2+HNCO→IM3→TS5→IM4→TS6→OSiF2CNH(P3) was the main channel with low potential energy, OSiF2CNH was the main product. The analyses for the combining interaction between SiF2 radical and HNCO with the atom-in-molecules theory (AIM) have been performed.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.