Much has been learned in recent years about the central mechanisms controlling the initiation of mammalian puberty. It is now clear that this process requires the interactive participation of several genes. Using a combination of high throughput, molecular, and bioinformatics strategies, in combination with a system biology approach, we singled out from the hypothalamus of nonhuman primates and rats a group of related genes whose expression increases at the time of female puberty. Although these genes [henceforth termed tumorrelated genes ( D URING THE LAST few years, significant progress has been made toward elucidating the basic cellular and molecular mechanisms underlying the neuroendocrine control of mammalian puberty. Specific transsynaptic and gliato-neuron communication pathways affecting the GnRH neuronal network have been identified, and the relative importance of each of these pathways in controlling the pubertal process has been demonstrated, along with some of their structural and functional interactions. The neuronal networks most critically involved in controlling GnRH release during sexual development have been shown to be those that use excitatory/inhibitory amino acids (reviewed in Ref. 1), and the recently identified neuropeptide metastin/ kisspeptin (2, 3), for neurotransmission. Cell-cell signaling molecules that, produced in astroglial cells, facilitate GnRH secretion have been identified, and genetic approaches have been used to define the physiological contribution of these molecules to the pubertal process (reviewed in Ref. 4).These efforts have also made clear that no isolated pathway or cellular subset is responsible for the neuroendocrine control of puberty. Instead, this control is likely exerted by complex regulatory gene networks composed of functional modules. A global approach for the system-level identification of such networks has never been attempted, essentially due to the lack of appropriate technology and the relative paucity of genetic and biochemical details that can be assimilated into a testable biological model. The emergence of high-throughput approaches and computational methods to organize, display, and analyze the plethora of results derived from such approaches is rapidly changing this landscape and giving us for the first time the opportunity of identifying functional genetic modules involved in the hierarchical control of puberty.Although mathematical models for common mechanisms of gene regulation are available (see, for instance, Ref. 5), most current models of genetic network architecture derive from nonmammalian species in which single metabolic or developmental pathways have been analyzed (e.g. Refs. 6 -8). The development of similar models to explain integrated functions of much more complex tissues, such as the hypothalamus, has been (and continues to be) exceedingly difficult because of the cellular heterogeneity of the nervous tissue, the lack of adequate sets of biochemical and genetic markers that can be used to build the network, the complexity of the...