The prevalence of Type II Diabetes (T2D) has been increasing and has become a disease of significant public health burden in Jordan. None of the previous genome-wide association studies (GWAS) have specifically investigated the Middle-East populations. The Circassian and Chechen communities in Jordan represent unique populations that are genetically distinct from the Arab population and other populations in the Caucasus. Prevalence of T2D is very high in both the Circassian and Chechen communities in Jordan despite low obesity prevalence. We conducted GWAS on T2D in these two populations and further performed meta-analysis of the results. We identified a novel T2D locus at chr20p12.2 at genome-wide significance (rs6134031, P=1.12x10 -8 ) and we replicated the results in the Wellcome Trust Case Control Consortium (WTCCC) dataset. Another locus at chr12q24.31 is associated with T2D at suggestive significance level (top SNP rs4758690, P= 4.20x10 -5 ) and it is a robust eQTL for the gene, MLXIP (P=1.10x10 -14 ), and is significantly associated with methylation level in MLXIP, the functions of which involves cellular glucose response.Therefore, in this first GWAS of T2D in Jordan subpopulations, we identified novel and unique susceptibility loci which may help inform the genetic underpinnings of T2D in other populations.Manuscript to be reviewed 53 54 55 56 Abstract 57 The prevalence of Type II Diabetes (T2D) has been increasing and has become a disease of 58 significant public health burden in Jordan. The genetic determinants of T2D in Middle-East 59 populations have not been well studied by genome-wide association studies (GWAS). The 60 Circassian and Chechen communities in Jordan represent unique populations that are genetically 61 distinct from the Arab population and other populations in the Caucasus. Prevalence of T2D is 62 very high in both the Circassian and Chechen communities in Jordan despite low obesity63 prevalence. We conducted GWAS on T2D in these two populations and further performed meta-64 analysis of the results. We identified a novel T2D locus at chr20p12.2 at genome-wide 65 significance (rs6134031, P=1.12x10 -8 ) and we replicated the results in the Wellcome Trust Case 66 Control Consortium (WTCCC) dataset. Another locus at chr12q24.31 is associated with T2D at a 67 suggestive significance level (top SNP rs4758690, ). This SNP is a robust eQTL for 68 the gene, MLXIP (P=1.10x10 -14 ), and is significantly associated with methylation level in 69 MLXIP, the functions of which involves cellular glucose response. Therefore, in this first GWAS 70 of T2D in Jordan subpopulations, we identified novel and unique susceptibility loci which may 71 help inform the genetic underpinnings of T2D in other populations.
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