Defense Response in Chickpea Pod Wall due to Simulated Herbivory Unfolds Differential Proteome Profile

Bhattacharjee, Mamta; Dhar, Santanu; Handique, Pratap Jyoti; Boruah, Rashmi Rekha; Sarmah, B. C.

doi:10.1007/s10930-020-09899-9

Cited by 3 publications

(1 citation statement)

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“…These genes included pleiotropic drug resistance transporter ABCG36 , which provides pathogen resistance in Arabidopsis [ 48 , 49 ] and FAH1 , also identified to be an important component of stress response in Arabidopsis [ 50 ]. Additionally, the serine/threonine-protein kinase D6PKL2 , part of the auxin response pathway, is upregulated during herbivory in chickpea as well as bilberry [ 47 , 51 ]. In addition to pathogen resistance, several genes in the various Vmac lines were identified under selection pressure for stress tolerance.…”

Section: Discussionmentioning

confidence: 99%

Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

et al. 2022

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Cranberry (Vaccinium macrocarpon) is a member of the Heath family (Ericaceae) and is a temperate low-growing woody perennial native to North America that is both economically important and has significant health benefits. While some native varieties are still grown today, breeding programs over the past 50 years have made significant contributions to improving disease resistance, fruit quality and yield. An initial genome sequence of an inbred line of the wild selection ‘Ben Lear,’ which is parent to multiple breeding programs, provided insight into the gene repertoire as well as a platform for molecular breeding. Recent breeding efforts have focused on leveraging the circumboreal V. oxycoccos, which forms interspecific hybrids with V. macrocarpon, offering to bring in novel fruit chemistry and other desirable traits. Here we present an updated, chromosome-resolved V. macrocarpon reference genome, and compare it to a high-quality draft genome of V. oxycoccos. Leveraging the chromosome resolved cranberry reference genome, we confirmed that the Ericaceae has undergone two whole genome duplications that are shared with blueberry and rhododendron. Leveraging resequencing data for ‘Ben Lear’ inbred lines, as well as several wild and elite selections, we identified common regions that are targets of improvement. These same syntenic regions in V. oxycoccos, were identified and represent environmental response and plant architecture genes. These data provide insight into early genomic selection in the domestication of a native North American berry crop.

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Section: Discussionmentioning

confidence: 99%

Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

et al. 2022

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Induced defense responses in cultivated and wild chickpea genotypes against Helicoverpa armigera infestation

et al. 2023

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Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

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et al. 2021

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Cranberry (Vaccinium macrocarpon) is a member of the Heath family (Ericaceae) and is a temperate low-growing woody perennial native to North America that is both economically important and has significant health benefits. While some native varieties are still grown today, breeding programs over the past 50 years have made significant contributions to improving disease resistance, fruit quality and yield. An initial genome sequence of an inbred line of the wild selection Ben Lear, which is parent to multiple breeding programs, provided insight into the gene repertoire as well as a platform for molecular breeding. Recent breeding efforts have focused on leveraging the circumboreal V. oxycoccos, which forms interspecific hybrids with V. macrocarpon, offering to bring in novel fruit chemistry and other desirable traits. Here we present an updated, chromosome-resolved V. macrocarpon reference genome, and compare it to a high-quality draft genome of V. oxycoccos. Leveraging the chromosome resolved cranberry reference genome, we confirmed that the Ericaceae has undergone two whole genome duplications that are shared with blueberry and rhododendron. Leveraging resequencing data for Ben Lear inbred lines, as well as several wild and elite selections, we identified common regions that are targets of improvement. These same syntenic regions in V. oxycoccos, were identified and represent environmental response and plant architecture genes. These data provide insight into early genomic selection in the domestication of a native North American berry crop.

show abstract

Defense Response in Chickpea Pod Wall due to Simulated Herbivory Unfolds Differential Proteome Profile

Cited by 3 publications

References 83 publications

Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

Induced defense responses in cultivated and wild chickpea genotypes against Helicoverpa armigera infestation

Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding

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