Mosses are ecologically important plants also used for greening, gardening, and decorative purposes. Knowledge of the microbial flora associated with mosses is expected to be important for control and preservation of global and local environments. However, the moss-associated microbial flora is often poorly known. Moss-associated fungi and bacteria may promote plant growth and pest control, but they may be alternative hosts for pathogens of vascular plants. In this study, the fungus
Sclerotinia delphinii
was identified for the first time as a pathogen that causes severe damage to Sunagoke moss (
Racomitrium japonicum
). This moss is used for greening roofs and walls of buildings in urban environments owing to its notable tolerance of environmental stresses. Inoculation with the
S. delphinii
strain SR1 of the mono- and dicotyledonous seed plants
Hordeum vulgare
,
Brassica rapa
var.
pekinensis
,
Lactuca sativa
, and
Spinacia oleracea
, in addition to the liverwort
Marchantia polymorpha
and the moss
Physcomitrella patens
, showed that the fungus has a wide host range. Colonization with SR1 progressed more rapidly in non-vascular than in vascular plant species. Studies with
P. patens
under controlled conditions showed that SR1 secreted a fluid during colonization. Treatment with the secretion induced production of reactive oxygen species in the moss. Endogenous peroxidase partially inhibited SR1 colonization of
P. patens
. A bacterial isolate, most likely
Bacillus amyloliquefaciens
, that coexists with
R. japonicum
was antagonistic to SR1 growth. Taken together, the present results suggest that fungal colonization of mosses may be prevented by a peroxidase secreted by the moss and an antagonistic bacterium coexisting in the moss habitat. The findings suggest that there is potential to apply biological control measures for protection of mosses against fungal pathogens.