Deep learning of SARS-CoV-2 outbreak phylodynamics with contact tracing data
Ruopeng Xie,
Dillon C. Adam,
Shu Hu
et al.
Abstract:Deep learning has emerged as a powerful tool for phylodynamic analysis, addressing common computational limitations affecting existing methods. However, notable disparities exist between simulated phylogenetic trees used for training existing deep learning models and those derived from real-world sequence data, necessitating a thorough examination of their practicality. We conducted a comprehensive evaluation of model performance by assessing an existing deep learning inference tool for phylodynamics, PhyloDee… Show more
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