Deciphering the recent trends in pesticide bioremediation using genome editing and multi-omics approaches: a review

Hassan, Shahnawaz; Ganai, Bashir Ahmad

doi:10.1007/s11274-023-03603-6

Cited by 16 publications

(5 citation statements)

References 179 publications

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“…This suggests that these four pesticides may be important for the maintenance of rice quality, while deltamethrin may have some problems with quality. Therefore, attention needs to be paid to the spray dosage when using deltamethrin, and biological means of degradation of this pesticide residue can be considered 24 .…”

Section: Resultsmentioning

confidence: 99%

Rice quality prediction and assessment of pesticide residue changes during storage based on Quatformer

Jiang,

Deng,

Dong

et al. 2024

Sci Rep

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Rice serves as a fundamental food staple for humans. Its production process, however, unavoidably exposes it to pesticides which may detrimentally impact its quality due to residues. Therefore, it is extremely necessary to monitor pesticide residues on rice during storage. In this research, the Quatformer model, which considers the effects of temperature and humidity on pesticide residues in rice grains, was utilized to forecast the amount of pesticide residues in rice grains during the storage process, and the predicted results were combined with actual observations to form a quality assessment index. By applying the K-Means algorithm, the quality of rice grains was graded and assessed. The findings indicated that the model had high prediction accuracy, and the MAE, MSE, MAPE, RMSE and SMAPE indexes were calculated to be 0.0112, 0.0814, 0.1057, 0.1055 and 0.0204, respectively. These findings provide valuable technical and theoretical support for planning storage conditions, enhancing pesticide residue decomposition, and monitoring rice quality during storage.

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Section: Resultsmentioning

confidence: 99%

Rice quality prediction and assessment of pesticide residue changes during storage based on Quatformer

Jiang,

Deng,

Dong

et al. 2024

Sci Rep

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“…Interestingly, soils associated with mosses were also enriched in two known bacterial genera, Paenibacillus and Spirosoma , both previously isolated from mosses and biocrusts, and widely known for their great potential in bioremediation (Hassan & Ganai, 2023; Yang et al., 2016; Zhang et al., 2019; Zhou et al., 2015). This suggests the role of bryophytes as an untapped source of microbial metabolites with biotechnological applications.…”

Section: Discussionmentioning

confidence: 99%

Unearthing the soil‐borne microbiome of land plants

Ochoa‐Hueso,

Eldridge,

Berdugo

et al. 2024

Global Change Biology

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Plant–soil biodiversity interactions are fundamental for the functioning of terrestrial ecosystems. Yet, the existence of a set of globally distributed topsoil microbial and small invertebrate organisms consistently associated with land plants (i.e., their consistent soil‐borne microbiome), together with the environmental preferences and functional capabilities of these organisms, remains unknown. We conducted a standardized field survey under 150 species of land plants, including 58 species of bryophytes and 92 of vascular plants, across 124 locations from all continents. We found that, despite the immense biodiversity of soil organisms, the land plants evaluated only shared a small fraction (less than 1%) of all microbial and invertebrate taxa that were present across contrasting climatic and soil conditions and vegetation types. These consistent taxa were dominated by generalist decomposers and phagotrophs and their presence was positively correlated with the abundance of functional genes linked to mineralization. Finally, we showed that crossing environmental thresholds in aridity (aridity index of 0.65, i.e., the transition from mesic to dry ecosystems), soil pH (5.5; i.e., the transition from acidic to strongly acidic soils), and carbon (less than 2%, the lower limit of fertile soils) can result in drastic disruptions in the associations between land plants and soil organisms, with potential implications for the delivery of soil ecosystem processes under ongoing global environmental change.

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“…In this sense, it should be noted that secondary metabolites released after pesticide degradation can be more toxic than their parental compound. This approach has been recently reviewed in bioremediation in the environment [96]. Synthetic biology could represent a valuable tool to find solutions for the degradation of pesticide residues.…”

Section: Discussionmentioning

confidence: 99%

Pesticides in Foods: Towards Bioremediation Biocatalysts?

Perpetuini,

Nzobouh Fossi,

Kwak

et al. 2023

Catalysts

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The presence of hazardous chemical compounds in foods is a growing concern in almost every country. Although some toxins come from microbial contamination, a major part comes from residues of pesticides used for plant health and food preservation. Despite plans to decrease their use, the concentration of hazardous residues encountered in food is growing. The societal solution to this issue is to find alternatives to chemicals and replace the most hazardous by biodegradable, fewer toxic compounds. However, as this greener transition takes some time, any transitory solution to decrease the risks of contamination is welcome. Among them, the stimulation of microbial pesticide degradation in food in a similar way to bioremediation in the environment would be very positive. In this review, we present the problem of food contamination, focusing on organophosphates and organochlorines, and the various possibilities of microbial decontamination. We discuss the possible use of microbial biocatalysts as a biopreservation tool. We conclude that, although this process is very promising, it lacks research taking into account the various degradation products and the elaboration of screening procedures able to choose some rare, efficient biopreservation strains.

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Deciphering the recent trends in pesticide bioremediation using genome editing and multi-omics approaches: a review

Cited by 16 publications

References 179 publications

Rice quality prediction and assessment of pesticide residue changes during storage based on Quatformer

Rice quality prediction and assessment of pesticide residue changes during storage based on Quatformer

Unearthing the soil‐borne microbiome of land plants

Pesticides in Foods: Towards Bioremediation Biocatalysts?

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