With the change of graduate education from quantity expansion to quality promotion, how to improve the quality of graduate cultivation has aroused wide concern. However, existing scientific quantitative methods tend to investigate the results of graduate training, with a lack of attention to the multidimensional data during the training process. Thus, exploratory analysis of multidimensional data in the graduate training process and accurate grasp of the key process factors affecting graduate academic competence is an indispensable task for achieving the stated goals of graduate education. In this paper, a visual analytic system of graduate training data is proposed to help users implement in-depth analysis based on the graduate training process. First, a questionnaire is designed about the training process to identify multidimensional data timely and accurately. Then, a series of data mining methods are utilized to further detect key factors in the training process, which will be used to make academic predictions for first-year graduates. Meanwhile, an interactive visual analytic system has been developed to help users understand and analyze the key factors affecting the graduate training process. Based on the results of the visual analysis, effective suggestions will be provided for graduate students, supervisors, and university administrators to improve the quality of graduate education.