Innate lymphoid cells (ILCs) type 3, also known as lymphoid tissue inducer cells, plays a major role in both the development and remodeling of organized lymphoid tissues and the maintenance of adaptive immune responses. HIV/simian immunodeficiency virus (SIV) infection causes breakdown of intestinal barriers resulting in microbial translocation, leading to systemic immune activation and disease progression. However, the effects of HIV/SIV infection on ILC3 are unknown. Here, we analyzed ILC3 from mucosal and systemic lymphoid tissues in chronically SIVâinfected macaques and uninfected controls. ILC3 cells were defined and identified in macaque lymphoid tissues as nonâT, nonâB (lineageânegative), câKit+ILâ7Rα+ (CD117+CD127+) cells. These ILC3 cells highly expressed CD90 (âŒ63%) and aryl hydrocarbon receptor and produced ILâ17 (âŒ63%), ILâ22 (âŒ36%), and TNFâα (âŒ72%) but did not coexpress CD4 or NK cell markers. The intestinal ILC3 cell loss correlated with the reduction of total CD4+ T cells and T helper (Th) 17 and Th22 cells in the gut during SIV infection (P< 0.001). Notably, ILC3 could be induced to undergo apoptosis by microbial products through the TLR2 (lipoteichoic acid) and/or TLR4 (LPS) pathway. These findings indicated that persistent microbial translocation may result in loss of ILC3 in lymphoid tissues in SIVâinfected macaques, further contributing to the HIVâinduced impairment of gutâassociated lymphoid tissue structure and function, especially in mucosal tissues.âXu, H., Wang, X., Lackner, A. A., Veazey, R. S. Type 3 innate lymphoid cell depletion is mediated by TLRs in lymphoid tissues of simian immunodeficiency virusâinfected macaques. FASEB J. 29, 5072â5080 (2015). http://www.fasebj.org