48Amino acids are essential building blocks of life. However, increasing evidence 49 suggests that elevated amino acids cause cellular toxicity associated with numerous 50 metabolic disorders. How cells cope with elevated amino acids remains poorly 51 understood. Here, we show that a previously identified cellular structure, the 52 mitochondrial-derived compartment (MDC), is a dynamic, lumen-containing organelle 53 that functions to protect cells from amino acid stress. In response to amino acid 54 elevation, MDCs are generated from mitochondria, where they selectively sequester 55 and remove Tom70, a surface receptor required for import of nutrient carriers of the 56 SLC25 family. MDC formation is regulated by levels of mitochondrial carriers, and its 57 activation by amino acids occurs simultaneously with removal of plasma membrane-58 localized transporters via the multi-vesicular body (MVB) pathway. Combined loss of 59 MDC and MVB formation renders cells sensitive to elevated amino acids, suggesting 60 these pathways operate as a coordinated network to protect cells from amino acid 61 toxicity. 62
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KEYWORDS 64Mitochondria, vacuole, amino acid, MDC, branched-chain amino acids, nutrient 65 transporter, lysosome 66 67 68 69 70 nutrient transporters via the multi-vesicular body (MVB) pathway also serves as a key 94 mechanism to control cellular nutrient uptake, and protects cells from amino acid toxicity 95 (Katzmann et al., 2002;Risinger et al., 2006;Rubio-Texeira and Kaiser, 2006; Ruiz et 96 al., 2017). Beyond lysosomes and MVBs, additional mechanisms cells utilize to protect 97 themselves from amino acid toxicity remain unclear. 98While investigating the impact of lysosome failure on mitochondrial health, we 99 identified a new cellular structure that forms from mitochondria when lysosomal 100 acidification is impaired, called the mitochondrial-derived compartment (MDC) (Hughes 101 et al., 2016). Upon formation, MDCs selectively incorporate a number of mitochondrial 102 proteins including Tom70, an outer membrane (OM) import receptor for mitochondrial 103 nutrient transporters (Sollner et al., 1990). By contrast, MDCs exclude most other 104 mitochondrial proteins, including those in the mitochondrial matrix, the intermembrane 105 space (IMS), and the majority of inner membrane (IM) proteins. After formation, MDCs 106 are released from mitochondria via mitochondrial fission and are degraded by 107 autophagy (Hughes et al., 2016). Currently, we know that MDCs are Tom70-enriched 108 foci that associate with mitochondria when cells lose lysosome acidification. Beyond 109 that, we understand little about the dynamics and regulation of MDC formation, as well 110 as the function of this new cellular compartment. 111Here, we show that MDCs are dynamic mitochondrial-associated compartments 112 that are generated in response to perturbations in intracellular amino acid homeostasis. 113Specifically, we find that high levels of branched-chain amino acids (BCAAs) and their 114 breakdown products promote MDC formation. ...