426COM PUTER PROGRAMS electron-density map are too numerous, they can take up most of the available peak quota (defined by the operator and computational facilities) and prevent genuine solvent peaks from being considered. Further, if the protein portion of the refinement model is poorly determined, there is a danger that unassigned difference electron-density peaks that belong to protein atoms may be interpreted as water molecules. Our experience indicates that, when the position of a protein atom is incorrectly modeled as a water molecule, it often causes excessive movements in neighboring protein atoms during refinement. To alleviate this problem, an option that could be added to future versions of ASIR would screen out water molecules that cause excessive movements in neighboring protein atoms.
AbstractA computer program, P-RISCON, has been designed with the aim of finding the location and orientation of one or more independent fragments of known geometry in the unit cell from low-angle X-ray powder diffraction data only, provided that lattice parameters, space group and a set of integrated intensities are known. A 3D translational search is performed and, if required, rotations of each model about three orthogonal axes are applied, seeking the best match