The class of nonhistone chromosomal proteins that remains bound to DNA in chromatin in the presence of 2.5 M NaCl-5 M urea has proven refractile to biochemical analysis. In order to study its role in chromatin organization, we have produced monoclonal antibodies that are specific for the HeLa DNA-protein complex that remains after extraction of chromatin with high salt and urea. The antibody-producing clones were identified with an ELISA assay. Of the six clones selected, five were stabilized by limiting dilution. All clones are IgG producers. None cross-react significantly with native DNA, core histones, or the highmobility group nonhistone proteins. All antibodies are specific for nuclear or juxtanuclear antigens. Indirect immunofluorescence shows that three antibodies, which are nonidentical, stain three different nuclear networks. Available evidence indicates that two of these networks are the nuclear matrix. A fourth antibody reveals structures reminiscent of chromocenters. A fifth antibody, AhNA-I, binds to interphase HeLa chromatin and specifically decorates metaphase chromosomes. AhNA-I similarly recognizes rat chromosomes. Each of these monoclonal antibodies also reveals a changing pattern of nuclear staining as cells progress through the cell cycle. Presumably, this reflects the rearrangement of the cognate antigens.The eucaryotic chromosome contains at least twice as much protein by mass as DNA and both are complexed in a structure defined as chromatin. Treatment of either purifed nuclei or chromatin by high salt (2.0 M NaC1) removes almost all histones and most nonhistone proteins (1-3). The proteins remaining bound to DNA in chromatin after high ionic strength extraction (2 M NaCI or 2 M NaC1-5M urea) are nonhistones, and they constitute 5-8% of the total chromatin protein. These are termed residual or tight-binding proteins (4-6). The tight-binding, nonhistone chromatin proteins (TBP) from animal cell nuclei are electrophoretically complex (~200 species, Bhorjee, J. S. and L. Kite, unpublished data), and are distributed nonrandomly along the DNA molecule (reference 5, reviewed in reference 6).Two functions for these proteins have been suggested, although no direct evidence exists. Based on the DNA sequencespecific association of certain nonhistone proteins with chromatin DNA, a role in specific gene expression for these proteins has been proposed (7-13). It has also been demonstrated that some TBPs bind to androgen-receptor (14) and progesterone-receptor (15) complexes. Thus, at least some gene regulatory molecules in eukaryotes may reside in this group of chromosomal proteins. A second function may be structural. The structural integrity of the nuclear matrix (4, 16) and the chromosome scaffold (17) seems to rely on the presence of such high-ionic strength (2 M NaCI), nonextractable nuclear nonhistone proteins.Closer examination of these proposals by biochemical analysis of individual tight-binding nonhistone proteins has not been possible for two reasoaas: (a) each is present in small am...