Uniporters are a large class of transporters mediating facilitated diffusion of substrates along the direction of the substrate concentration gradient. Recently, structures of several important uniporters have been reported; however, the precise mechanisms of uniporter function remain subject of debate. Here, we present a series of general thermodynamic descriptions of uniporters, aimed at understanding the structure-function relationship of uniporters, and in particular to reconcile biochemical phenomena of uniporters with our previously proposed thermodynamic model of general transporters.Keywords: uniporters; differential binding energy; elastic conformational energy; transition-state energy barrier; rate-limiting step; kinetic asymmetry
UniporterThe cellular membrane presents a major energy barrier to hydrophilic small molecules to move across. This barrier is usually so high that translocation of these small molecules across the membrane along their concentration gradients is practically halted, even in the presence of a thermodynamically favorable chemical potential. The function of uniporters is to lower this energy barrier for selected substrates, so that the substrates can be transported along their own concentration gradients, a process called facilitated diffusion. A uniporter is a transporter that does not require energy input other than the substrate chemical potential. Like all transporters, a uniporter differs from a channel in that the former uses the alternating access mechanism 1 while the latter does not. Using this mechanism, a uniporter switches between two major conformations, namely inward-facing (C In ) and outwardfacing (C Out ), allowing its substrate-binding site to be accessible alternatingly to both sides of the membrane. The energy barrier for a hydrophilic molecule to transport passively across the cellular membrane is analogous to the transition-state energy barrier in a chemical reaction. According to the transitionstate theory of enzymology, an enzyme stabilizes the transition state of the reactants, thus effectively lowering the transition-state energy barrier. However, the reaction is driven by the chemical energy Abbreviations: C In , inward-facing conformation; C Out , outwardfacing conformation.