Current gene therapies for DMD aim to match benign spontaneous deletions for correcting out-of-frame DMD mutations. Deletion of 45-55 DMD exons (del45-55) is one of the candidates, as it has been described in asymptomatic subjects, but recently serious skeletal and cardiac complications have been reported. Uncovering the mechanisms that transform a benign mutation into a severe one is crucial for understanding the pathophysiological mechanisms of dystrophinopathies and may condition the strategies of emerging therapies. Cellular models are essential for this purpose, but its availability is compromised by the need of a muscle biopsy. Here, we have introduced into a DMD cell line a del45-55 mimicking the intronic breakpoints of a subgroup of patients, through the CRISPR-Cas9 system. We observed the edited myoblasts recovered the dystrophin expression and ameliorated the myogenic defects. Besides, we confirmed the potential of CRISPR-Cas9 to create tailored mutations, being an useful approach to generate in vitro models. Also, we generated an immortalized myoblast line derived from a patient with the specific del45-55. Thus, we provide helpful resources to deep into unknown factors responsible of DMD severity.