In Creutzfeldt-Jakob disease three major peptides cosedinient with the infectious agent. These distinct peptides are not present in identical fractions from uninfected brain, and bind to polyclonal antibodies raised against "prion protein" purified by protease treatment. Three similar distinct peptides are also found in scrapie-infected brain fractions purified without the use of proteases. To clarify the relationships between these distinct peptides and prion protein, peptides were analyzed on immunoblots after cleavage with various glycosidases. (2,(7)(8)(9). Previous studies suggested PrP could be partially or completely derived from a 33-to 35-kDa peptide (2, 10). The PrP nucleotide sequence, which was identified using a synthetic oligonucleotide (10), is found in the host genome. PrP mRNA is present in equivalent amounts in both normal and infected tissues (10, 11). We thus sought to further characterize the major peptides in nonprotease-treated CJD infectious fractions (i) to further clarify the origin of PrP, (ii) to determine the nature of the glycosylation on major peptides, and (iii) to resolve the question of peptide heterogeneity in infectious fractions. With glycosidase treatments and nonequilibrium pH gradient electrophoresis (NEPHGE) it was possible to determine the sugar residues on each distinct peptide species ahd to clearly delineate heterogeneous, peptides that cosediment with the infectious agent. These analyses suggest that the identified PrP sequence may be but one of several major feptide species that cosediment with the CJD and scrapie agents.
MATERIALS AND METHODSThe 215,000 x g salt pellet (p215s), which conltains high yields of the infectious agent (2), was derived from CJD infected hamster brains (12) with the addition of 0.05% (vol/vol) diisopropylfluorophosphate and 0.5 mM phenylmethylsulfonyl fluoride. Some p215s pellets were resuspended and treated with proteinase K (2, 13). Similarly prepared 263K scrapie p215s fractions were a generous gift of R. Rubinstein. Proteins were blotted from NaDodSO4/polyacrylamide gels (2) and reacted with biotinylated lectins or anti-scrapie antibodies as described (2), except that goat anti-rabbit alkaline phosphatase (1:1000 dilution, Tago) was used to detect antibodies. Neuraminidase (0.5 unit/ml, Calbiochem) digestions were done in 25 mM sodium acetate (pH 5.5), 2 mM CaC12, 77 mM NaCl at 370C for 24 hr (14,15
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