Conserved noncoding sequence (CNS)-1 has been shown to coordinately regulate the expression of the Th2 cytokine genes IL4, IL13, and IL5. We have used the interaction between CNS-1 and the human IL13 and IL4 promoters as a model to pursue the molecular mechanisms underlying CNS-1-dependent regulation of Th2 cytokine gene transcription. CNS-1 potently enhanced the activity of IL13 and IL4 promoter reporter vectors upon full T cell activation. Analysis of CNS-1 deletion mutants mapped enhancer activity to a short core (CNS-1-(270 -337)) that contains three closely spaced cyclic AMP-responsive elements (CRE). CRE site 2 bound CRE-binding protein (CREB) and activating transcription factor (ATF)-2 in vitro and was essential for CNS-1-dependent up-regulation of IL13 transcription. Cotransfection of an IL13 reporter construct with expression vectors for wild type or mutant CREB and ATF-2 showed that CREB, but not ATF-2, regulates CNS-1 enhancer activity. Notably, chromatin immunoprecipitation analysis showed T cell activation recruits CREB and the coactivator CREB-binding protein (CBP)/p300 to the endogenous CNS-1. Moreover, CBP/ p300 activity was essential for CNS-1-mediated enhancement of IL13 transcription. Collectively, these data define the region within CNS-1 responsible for enhancement of IL13 and IL4 transcription and suggest CREB/CBP-dependent mechanisms play an important role in facilitating Th2 cytokine gene expression in response to T cell receptor signaling.
Dysregulated expression of the cytokines IL2 -4, IL-13, and IL-5 in CD4 T cells of the Th2 lineage plays a pivotal role in the pathogenesis of allergic inflammation. The IL4, IL13, and IL5 genes, closely arrayed within 150 kb of human chromosome 5q31 and the syntenic region of mouse chromosome 11, typically demonstrate coordinated expression (1, 2), a feature critical for the emergence of a bona fide allergic phenotype in experimental and clinical models. However, the molecular mechanisms underlying the concerted expression of Th2 cytokines remained elusive despite intense investigation.A breakthrough came as a result of comparative genomics analyses to identify noncoding regions highly conserved (Ն70% identity) between humans and evolutionarily distant mammalian species (3). These elements, abundant in the human genome, display characteristics indicative of regulatory function. In particular, they tend to demonstrate higher selective constraint than genomic regions that encode translated or noncoding RNAs (4, 5) and contain short, alternating stretches of sequence with high or low divergence, a pattern typical of protein-binding sites (5).The search for highly conserved noncoding sequences in ϳ1 Mb of human chromosome 5q31 identified several elements (3). The largest of these, conserved noncoding sequence (CNS)-1, mapped within the IL4/IL13 intergenic region of the Th2 cytokine locus. Deletion of CNS-1, either from a transgene or the native murine locus, led to a marked decrease in the expression of all three cytokine genes (3, 6), establishing CNS-1 ...