(25,26). Their overproduction depends on the drug used for selection, however. In addition, the putative mouse homolog (21 kDa) of V19 has recently been reported to disappear after prolonged culture, even though multidrug resistance was retained (24). The loss of proteins (72 and 75 kDa) has also been found in a multidrug-resistant cell line (27), completing the spectrum of altered protein levels which have been associated with * Corresponding author. multidrug resistance. How each of these proteins contributes to the ability of the cell to maintain a low intracellular drug concentration is unknown.The overproduction of proteins, and in particular those involved in drug resistance in mammalian cells, is often the result of gene amplification (see references 7, 14, 21, 33, 36). Homogeneously staining regions or double minute chromosomes, both known to carry amplified DNA, have been observed in a variety of multidrug-resistant cell lines (3,5,12,29). The degree of amplification, reflected by the size of the homogeneously staining region or the number of double minute chromosomes, can be correlated with the level of P-glycoprotein overproduction (5,29,31). Recently, a cDNA clone encoding part of the P-glycoprotein has been isolated from an expression library (29). This clone hybridizes to a homogeneously staining region, and, in line with the cytological observations, the degree of amplification corresponds to the level of resistance. Although overproduction of the 170-kDa P-glycoprotein remains the most consistent feature, homogeneously staining regions have also been observed in multidrug-resistant cell lines without an apparent overproduction of the P-glycoprotein (24).The disparity in altered protein levels and gene amplification suggests that several proteins contribute to the multidrug-resistant phenotype. To identify genes encoding proteins involved in multidrug resistance, we constructed a cDNA library from the resistant chinese hamster ovary (CHO) cell line CH"C5 and isolated cDNA clones derived from overexpressed transcripts by differential hybridization. In this paper we describe the initial characterization of cDNAs corresponding to at least five genes that are overexpressed and amplified in the resistant cell line.MATERIALS AND METHODS Cell culture. The CHO cell lines AUXB1 and CHRC5 were cultured as described previously (22) without colchicine.