Abstract:We propose large-core correlation-consistent pseudopotential basis sets for the heavy p-block elements Ga-Kr and In-Xe. The basis sets are of cc-pVTZ and cc-pVQZ quality, and have been optimized for use with the large-core (valence-electrons only) Stuttgart-Dresden-Bonn relativistic pseudopotentials.Validation calculations on a variety of third-row and fourth-row diatomics suggest them to be comparable in quality to the all-electron cc-pVTZ and cc-pVQZ basis sets for lighter elements. Especially the SDB-cc-pVQ… Show more
“…This compares to an RMS error of 0.292 V for M06 for the same basis set. We see that our basis set (including the two f -functions from [5] on each metal) performs 0.04 to 0.08 V better than the Dunning correlation-consistent triple-ζ basis set which includes a double set of polarization functions, cc-pVTZ-(-f) ++ .…”
Section: Validation Of the Computational Methodology: Redox Potentialmentioning
confidence: 85%
“…was added to phosphorus [5]), LACV3P**++ for Mn (to which two f -funtion with exponents α = 0.795 and α = 3.118 were added to Manganese [5]); and LAV3D** for Ca to obtain the final energetics. [4].…”
The oxygen-evolving complex (OEC) of photosystem II contains a Mn 4 CaO n catalytic site, in which reactivity of bridging oxidos is fundamental to OEC function. We synthesized structurally relevant cuboidal Mn 3 MO n complexes (M = Mn, Ca, Sc; n = 3,4) to enable mechanistic studies of reactivity and incorporation of μ 3 -oxido moieties. We found that Mn IV 3 CaO 4 and Mn IV 3 ScO 4 were unreactive toward trimethylphosphine (PMe 3 ). In contrast, our Mn III 2 Mn IV 2 O 4 cubane reacts with this phosphine within minutes to generate a novel Mn III 4 O 3 partial cubane plus Me 3 PO. We used quantum mechanics to investigate the reaction paths for oxygen atom transfer to phosphine from Mn III 2 Mn IV 2 O 4 and Mn IV 3 CaO 4 . We found that the most favorable reaction path leads to partial detachment of the CH 3 COO − ligand, which is energetically feasible only when Mn(III) is present. Experimentally, the lability of metal-bound acetates is greatest for Mn III 2 Mn IV 2 O 4 . These results indicate that even with a strong oxygen atom acceptor, such as PMe 3 , the oxygen atom transfer chemistry from Mn 3 MO 4 cubanes is controlled by ligand lability, with the Mn IV 3 CaO 4 OEC model being unreactive. The oxidative oxide incorporation into the partial cubane, Mn III 4 O 3 , was observed experimentally upon treatment with water, base, and oxidizing equivalents. 18 O-labeling experiments provided mechanistic insight into the position of incorporation in the partial cubane structure, consistent with mechanisms involving migration of oxide moieties within the cluster but not consistent with selective incorporation at the site available in the starting species. These results support recent proposals for the mechanism of the OEC, involving oxido migration between distinct positions within the cluster.
“…This compares to an RMS error of 0.292 V for M06 for the same basis set. We see that our basis set (including the two f -functions from [5] on each metal) performs 0.04 to 0.08 V better than the Dunning correlation-consistent triple-ζ basis set which includes a double set of polarization functions, cc-pVTZ-(-f) ++ .…”
Section: Validation Of the Computational Methodology: Redox Potentialmentioning
confidence: 85%
“…was added to phosphorus [5]), LACV3P**++ for Mn (to which two f -funtion with exponents α = 0.795 and α = 3.118 were added to Manganese [5]); and LAV3D** for Ca to obtain the final energetics. [4].…”
The oxygen-evolving complex (OEC) of photosystem II contains a Mn 4 CaO n catalytic site, in which reactivity of bridging oxidos is fundamental to OEC function. We synthesized structurally relevant cuboidal Mn 3 MO n complexes (M = Mn, Ca, Sc; n = 3,4) to enable mechanistic studies of reactivity and incorporation of μ 3 -oxido moieties. We found that Mn IV 3 CaO 4 and Mn IV 3 ScO 4 were unreactive toward trimethylphosphine (PMe 3 ). In contrast, our Mn III 2 Mn IV 2 O 4 cubane reacts with this phosphine within minutes to generate a novel Mn III 4 O 3 partial cubane plus Me 3 PO. We used quantum mechanics to investigate the reaction paths for oxygen atom transfer to phosphine from Mn III 2 Mn IV 2 O 4 and Mn IV 3 CaO 4 . We found that the most favorable reaction path leads to partial detachment of the CH 3 COO − ligand, which is energetically feasible only when Mn(III) is present. Experimentally, the lability of metal-bound acetates is greatest for Mn III 2 Mn IV 2 O 4 . These results indicate that even with a strong oxygen atom acceptor, such as PMe 3 , the oxygen atom transfer chemistry from Mn 3 MO 4 cubanes is controlled by ligand lability, with the Mn IV 3 CaO 4 OEC model being unreactive. The oxidative oxide incorporation into the partial cubane, Mn III 4 O 3 , was observed experimentally upon treatment with water, base, and oxidizing equivalents. 18 O-labeling experiments provided mechanistic insight into the position of incorporation in the partial cubane structure, consistent with mechanisms involving migration of oxide moieties within the cluster but not consistent with selective incorporation at the site available in the starting species. These results support recent proposals for the mechanism of the OEC, involving oxido migration between distinct positions within the cluster.
“…All calculations carried out in this work have been performed with the program MOLPRO 23 running on the HP-XC 4000 cluster of the ULB/VUB computing 27 augmented by 3f and 2g Gaussian primitives playing the role of polarization functions. 28 The aug-cc-pVTZ correlation consistent basis set 29,30 is used for the fluorine atom. The equilibrium geometry of the three low-lying states were determined at the IC-MRCIþQ level of theory using the numerical quadratic steepest descent algorithm implemented in MOLPRO.…”
International audienceThe spectroscopy of the ZrF radical, produced by a laser ablation-molecular beam experimental setup, has been investigated for the first time using a two-color two-photon (1 + 1′) REMPI scheme and time-of-flight (TOF) mass spectrometry detection. The region of intense bands 400-470 nm has been studied, based upon the first spectroscopic observations of the isovalent ZrCl radical by Carroll and Daly.(1) The overall spectrum observed is complex. However, simultaneous and individual ion detection of the five naturally occurring isotopologues of ZrF has provided a crucial means of identifying band origins and characterization via the isotopic shift, δiso, of the numerous vibronic transitions recorded. Hence, five (0-0) transitions, of which only two were free of overlap with other transitions, have been identified. The most intense (0-0) transition at 23113 cm-1 presented an unambiguously characteristic RQP rotational structure. From rotational contour simulations of the observed spectra, the nature of the ground electronic state is found to be unambiguously of 2Δ symmetry, leading to the assignment of this band as (0-0) 2Δ ← X2Δ at 23113 cm-1. A set of transitions (1-0) 2Δ ← X2Δ at 22105 cm-1 and (2-0) 2Φ ← X2Δ at 22944 cm-1 involving the X2Δ state has also been identified and analyzed. Furthermore, a second series of transitions with lesser intensity has also been related to the long-lived metastable 4Σ- state: (3-0) 4Π-1/2 ← 4Σ- at 21801 cm-1, (2-0) 4Π-1/2 ← 4Σ- at 21285 cm-1 and (2-0) 4Σ- ← 4Σ- at 23568 cm-1. These spectroscopic assignments are supported by MRCI ab initio calculations, performed using the MOLPRO quantum chemistry package, and show that the low-lying excited states of the ZrF radical are the 4Σ- and 4Φ states lying at 2383 and 4179 cm-1 respectively above the ground X 2Δ state. The difference in the nature of ground state and ordering of the first electronic states with TiF (X 4Φ)(2-4) and ZrCl,(5) respectively, is examined in terms of the ligand field theory (LFT)(7) applied to diatomic molecules. These results give a precise description of the electronic structure of the low lying electronic states of the ZrF transition metal radical
“…This set of tests also used a GGA functional method, BP86 [33], a hybrid meta-GGA, M06 [34], a double hybrid functional, B2-PLYP [35] and also the HF method. In addition, different basis sets were applied to the Mn atom, such as double-ζ LANL2DZ with ECP [31,32], the correlation consistent valence triple-ζ basis set with a Stuttgart-Dresden-Bonn fully relativistic effective core potential ECP10MDF [which will be referred in the text as VTZ-(ecp-10mdf)] [36,37] and also Weigend and Ahlrichs Def2-TVZP basis set [38] to whole system (see Supplementary material). Dichloromethane solvation effect was calculated with the continuous surface charge polarizable continuum model IEFPCM [39].…”
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