The ATP-binding cassette transporters associated with antigen presentation (Tap1 and Tap2) mediate the transport of peptide fragments across the endoplasmic reticulum membrane of mammalian cells. Tap1 and Tap2 are closely related to one another and are believed to function as a heterodimer. Each protein possesses a hydrophobic domain predicted to span the membrane multiple times and a highly conserved nucleotide-binding domain. We have assessed the transmembrane topology of Tap1 by expressing a series of fusions to a reporter protein, the mature form of -lactamase in Escherichia coli. From these data a topological model can be derived in which Tap1 spans the membrane eight times, with several large loops exposed in the lumen of the endoplasmic reticulum and with both the N and C termini (including the nucelotide-binding domain) residing in the cytoplasm.
Cytotoxic T lymphocytes (CTLs)1 continually survey cells for changes in cytosolic content. Antigens from cytoplasmic proteins are presented to the CTLs at the cell surface in the form of peptide fragments complexed with major histocompatibility class I and  2 -microglobulin molecules (1). These trimeric complexes are recognized by the T cell receptor on the CTLs. To assemble this trimeric complex, the peptide fragments which are normally generated by the proteasome in the cytoplasm, must be translocated into the lumen of the endoplasmic reticulum (ER). Two proteins, Tap1 and Tap2, are required for this transport process (2, 3). Tap1 and Tap2 each consist of a hydrophobic domain predicted to span the membrane multiple times, and an ATP-binding domain, which is believed to couple the energy of ATP hydrolysis to peptide transport. Tap1 and Tap2 function as a heteromer (4 -6) and are members of the ATP-binding cassette (ABC) superfamily of transporters (7).The transmembrane domains of ABC transporters typically (although there are exceptions; see below) consist of 12 clearly defined, putative membrane-spanning segments, which could, potentially, span the lipid bilayer. For a number of ABC transporters, both prokaryotic and eukaryotic, this predicted topology has been confirmed experimentally (8 -10). The N-terminal hydrophobic domains of Tap1 and Tap2 appear to differ from those of other ABC transporters in that the potential membrane-spanning segments are not clearly defined by conventional algorithms and appear to number more than 12 (for the Tap1-Tap2 complex). To clarify this situation we have analyzed the transmembrane topology of the human Tap1 protein using a genetic approach in which a reporter protein (the mature form of -lactamase) was fused to a series of defined points along the length of the Tap1 protein. The orientation of the -lactamase with respect to the membrane was assessed by its ability to confer ampicillin resistance when expressed in Escherichia coli. This approach, and the related phoA method, have been used, successfully, to study many other membrane proteins (11-13). The data generate a model in which Tap1 spans the membrane eight times...