cDNA complementary to hamster mRNA encoding the CAD protein, a multifunctional protein which carries the first three enzymes of pyrimidine biosynthesis, was constructed. The longest of these recombinants (pCAD142) covers 82% of the 7.9-kilobase mRNA. Portions of the cDNA were excised and replaced by a lac promoter-operator-initiation codon segment. The resultant plasmids were transfected into an Escherichia coli mutant defective in aspartate transcarbamylase, the second enzyme of the pathway. Complementation of the bacterial defect was observed with as little as 2.2 kilobases of cDNA sequence, corresponding to the 3' region of the mRNA. DNA sequencing in this region of the hamster cDNA reveals stretches which are highly homologous to the E. coil gene for the catalytic subunit of aspartate transcarbamylase; other stretches show no homology. The highly conserved regions probably reflect areas of protein structure critical to catalysis, while the nonconserved regions may reflect differences between the quaternary structures of E. coli and mammalian aspartate transcarbamylases, one such difference being that the bacterial enzyme in its native form is allosterically regulated and the mammalian enzyme is not.The six-step pathway of pyrimidine biosynthesis is common to organisms ranging from bacteria to mammals. In Escherichia coli, each step is catalyzed by a separate protein or protein complex, and aspartate transcarbamylase (ATCase; EC 2.1.3.2), the second enzyme, is the major point of allosteric control of the pathway (24). In mammals, the six enzymes are associated with only three proteins, and carbamoylphosphate synthetase (CPSase; EC 6.3.5.5), the first rather than the second enzyme of the pathway, is affected through allosteric regulation (20). The first three enzymes, i.e., CPSase, ATCase, and dihydroorotase (DHOase; EC 3.5.2.3), are found on a single trifunctional protein designated CAD. The CAD protein of hamster occurs as an oligomer of identical monomers of Mr 220,000 (8,10,25). Within each monomer, the protein appears to be organized into a series of independent functional domains separated from one another by proteolysis-sensitive peptide bridges (11,25,39). Each of the three enzyme activities is associated with a different domain.The CAD monomer of Syrian hamsters is encoded by an mRNA of 7.9 kilobases (kb; 45). The gene, on the other hand, spans more than 25 kb and is interrupted by over 30 introns (35). Previously, Wahl and coworkers (45) constructed a plasmid clone (pCAD41) containing a 2.3-kb insert complementary to the 3' region of CAD mRNA. However, for purposes of analyzing the organization of the CAD gene, a more complete CAD cDNA would be invaluable. In this paper we describe the construction of much larger cDNA inserts by the highly efficient cloning technique developed by Okayama and Berg (32). This paper also shows how the CAD cDNA can be used in conjunction with a bacterial * Corresponding author. mutant defective in pyrimidine biosynthesis as a powerful expression system (9) that can defin...