Premise of the studyFloral scent, usually consisting of multiple compounds, is a complex trait and its role in pollinator attraction has received increasing attention. However, it is difficult to disentangle the effect of individual floral scent compounds due to the complexity of isolating the effect of single compounds by traditional methods.MethodsUsing available quasi‐isogenic lines (qILs) generated as part of the original mapping of two floral scent volatile‐related loci, CNL1 (benzaldehyde) and TPS2 (β‐ocimene), in Capsella, we have generated four genotypes that should only systematically differ in these two compounds. Plants of the four genotypes were introduced into a common garden outside the natural range of C. rubella or C. grandiflora, with individuals of a self‐compatible C. grandiflora line as pollen donors, whose different genetic background facilitates the detection of outcrossing events. Visitors to flowers of all five genotypes were compared, and the seeds set during the common‐garden period were collected for high‐throughput amplicon‐based sequencing to estimate their outcrossing rates.Key resultsBenzaldehyde and β‐ocimene emissions were detected in the floral scent of corresponding genotypes. While some pollinator groups showed specific visitation preferences depending on scent compounds, the outcrossing rates in seeds did not vary among the four scent‐manipulated genotypes.ConclusionsThe successful construction of scent‐manipulated Capsella materials using qILs provides a powerful system to study the ecological effects of individual floral scent compounds under largely natural environments. In Capsella, individual BAld and β‐ocimene emission may act as attractants for different types of pollinators.This article is protected by copyright. All rights reserved.