Staphylococcus aureus pathogenicity islands (SaPIs) are
genetic elements that are mobilized by specific helper phages. The initial step
in mobilization is the derepression of the SaPI by the interaction of a phage
protein with the SaPI master repressor, Stl. Stl proteins are highly divergent
between different SaPIs and respond to different phage-encoded derepressors. One
such SaPI, SaPIbov1, is derepressed by the dUTPase (Dut) of bacteriophage
80α (Dut80α) and its phage ϕ11 homolog,
Dut11. We previously showed that SaPIbov1 could also be mobilized
by phage ϕNM1, even though its dut gene is not
homologous with that of 80α. Here, we show that ϕNM1
dut encodes a type 2 dUTPase (DutNM1), which has
an α-helical structure that is distinct from the type 1 trimeric,
β-sheet structure of Dut80α. Deletion of
dutNM1 abolishes the ability of ϕNM1 to
mobilize SaPIbov1. Like Dut80α, DutNM1 forms a
direct interaction with SaPIbov1 Stl both in vivo and
in vitro, leading to inhibition of the dUTPase activity and
Stl release from its target DNA. This work provides novel insights into the
diverse mechanisms of genetic mobilization in S. aureus.