Targeting and innervation of the cerebral cortex by thalamic afferents is a key event in the specification of cortical areas. The molecular targets of thalamic regulation, however, have remained elusive. We now demonstrate that thalamic afferents regulate the expression of ␥-aminobutyric acid type A (GABA A ) receptors in developing rat neocortex, leading to the area-specific expression of receptor subtypes in the primary visual (V1) and somatosensory (S1) areas. Most strikingly, the ␣1-and ␣5-GABA A receptors exhibited a reciprocal expression pattern, which precisely ref lected the distribution of thalamocortical afferents at postnatal day 7. Following unilateral lesions at the birth of the thalamic nuclei innervating V1 and S1 (lateral geniculate nucleus and ventrobasal complex, respectively), profound changes in subunit expression were detected 1 week later in the deprived cortical territories (layers III-IV of V1 and S1). The expression of the ␣1 subunit was strongly down-regulated in these layers to a level comparable to that in neighboring areas. Conversely, the ␣5 subunit was up-regulated and areal boundaries were no longer discernible in the lesioned hemisphere. Changes similar to the ␣5 subunit were also seen for the ␣2 and ␣3 subunits. These results indicate that the differential expression of GABA A receptor subtypes in developing neocortex is dependent on thalamic innervation, contributing to the emergence of functionally distinct areas.Targeting and innervation of the cerebral cortex by thalamic axons is a key event in the demarcation of the cortical anlage into a tangential map of individual areas (1-4). The specificity in targeting by thalamic axons is thought to be achieved through dynamic interactions with specific spatial or temporal cues at the appropriate cortical locus (5-9). However, the molecular postsynaptic targets regulated by thalamic afferents have remained elusive so far.Neurotransmitter receptors play a central role in shaping the functional properties of neuronal circuits. Among excitatory amino acid receptors, the N-methyl-D-aspartate (NMDA) receptors are involved in synaptic plasticity and in the refinement of synaptic connections (10-13). However, the areaspecific demarcation of the neocortex during development does not appear to involve NMDA receptor-mediated activity. The level of expression of NMDA receptors does not vary between distinct areas of developing neocortex, irrespective of thalamic innervation (14, 15). Furthermore, in primary somatosensory cortex (S1), the formation of barrels (the neuronal aggregates representing individual whiskers of the rodent snout) is not affected by chronic NMDA receptor blockade (16).In contrast to NMDA receptors, ␥-aminobutyric acid type A (GABA A ) receptors exhibit a prominent area-specific expression pattern in developing neocortex. The ␣1 subunit, which represents the vast majority of GABA A receptors in adult cortex, is highly expressed in a selective manner in layers III-IV of primary visual cortex (V1) and of S1 (17, 18). ...