2016
DOI: 10.1186/s12870-016-0741-4
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Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

Abstract: BackgroundUpland Cotton (Gossypium hirsutum) is one of the most important worldwide crops it provides natural high-quality fiber for the industrial production and everyday use. Next-generation sequencing is a powerful method to identify single nucleotide polymorphism markers on a large scale for the construction of a high-density genetic map for quantitative trait loci mapping.ResultsIn this research, a recombinant inbred lines population developed from two upland cotton cultivars 0–153 and sGK9708 was used to… Show more

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Cited by 122 publications
(108 citation statements)
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“…SD has previously been reported in interspecific populations of cotton (Guo et al, 2007; Blenda et al, 2012; Byers et al, 2012; Liang et al, 2012; Yu et al, 2013; Diouf et al, 2014; Zhang et al, 2014; Li et al, 2016), intraspecific populations of G. barbadense (Wang et al, 2013), intraspecific populations of G. hirsutum (Lin et al, 2009; Zhang et al, 2012, 2016; Ning et al, 2014), and intraspecific populations of G. arboreum (Li et al, 2007); however, the genetic mechanism of SD in cotton remains unclear.…”
Section: Discussionmentioning
confidence: 97%
“…SD has previously been reported in interspecific populations of cotton (Guo et al, 2007; Blenda et al, 2012; Byers et al, 2012; Liang et al, 2012; Yu et al, 2013; Diouf et al, 2014; Zhang et al, 2014; Li et al, 2016), intraspecific populations of G. barbadense (Wang et al, 2013), intraspecific populations of G. hirsutum (Lin et al, 2009; Zhang et al, 2012, 2016; Ning et al, 2014), and intraspecific populations of G. arboreum (Li et al, 2007); however, the genetic mechanism of SD in cotton remains unclear.…”
Section: Discussionmentioning
confidence: 97%
“…Hulse-Kemp et al constructed an ultra-high density genetic map using SNP arrays for marker detection and constructed a high-density genetic map consisting of 19,191 markers with 0.21 cM between adjacent markers [46]. Zhang et al constructed a high-density genetic map that contained 5,521 SNPs with an average marker density of 0.78 cM [47]. Thus, high-throughput sequencing techniques are more efficient.…”
Section: Discussionmentioning
confidence: 99%
“…In another report (Ning et al, 2013) the genetic map with 279 markers only covered about 35% of the cotton genome. The use of SNP markers and their applications to the marker assisted selection (MAS) allow to circumvent the problem of low genome coverage of intraspecific genetic map and to construct high density genetic map (Wei et al, 2014; Zhang et al, 2014b, 2016). So far, only one study (Fang et al, 2013b) has used a map covering more than 50% of the cotton genome (55.7%).…”
Section: Discussionmentioning
confidence: 99%
“…The cross was made in 2001 and a RIL population was developed by multiple cycles of selfing as described elsewhere (Sun et al, 2012; Jamshed et al, 2016; Zhang et al, 2016). Both parents showed some tolerance to VW some years while susceptible in other in natural field conditions on the experimental farm of the Institute of Cotton Research, Chinese Academy of Agricultural Sciences (ICRCAAS) located in Anyang, Henan province of China.…”
Section: Methodsmentioning
confidence: 99%