The experience of assessing the efficiency of quality management systems for the organizational structures, agricultural planning, and common approaches to solving this issue are currently insufficient. As a result, there was a contradiction between practice that recognizes the objective need for a periodic assessment of the efficiency of the quality management system in the organizational structures of agricultural companies and the state of the scientific and methodological base for resolving these issues. The need has arisen for creating an automated system for choosing rational organizational and technological solutions based on modern design technologies, planning and forming a new element base for economic development of a system-targeted approach to assessing the level of stability of net assets based on IPSAS. On the basis of the well-known BIM technology for information modeling of objects, a bank (information base) of standard implementation plans (IP) is created, from which the most rational IP for this type of work is selected using the criteria research method based on modified genetic algorithms (GA). Issues of choosing a method of managing agricultural planning by the totality of implementation plans are considered. An analysis of the selection of the main methods of production of works that are increasingly used in the practice of constructing agricultural facilities will ensure the formation of new approaches to the logistics of transport support in agriculture.