2020
DOI: 10.3389/fbioe.2020.00398
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Construction and Analysis of Human Diseases and Metabolites Network

Abstract: The relationship between aberrant metabolism and the initiation and progression of diseases has gained considerable attention in recent years. To gain insights into the global relationship between diseases and metabolites, here we constructed a human diseases-metabolites network (HDMN). Through analyses based on network biology, the metabolites associated with the same disorder tend to participate in the same metabolic pathway or cascade. In addition, the shortest distance between diseaserelated metabolites wa… Show more

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Cited by 16 publications
(13 citation statements)
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“…The central role of metabolism in different aspects of pathophysiological mechanisms and their tune regulation make these networks particularly interesting for extracting knowledge and making predictions. For example, the analysis of hub nodes 28 and the comparison of topological properties between different context-specific networks 29 are valuable resources in diagnostic and prognostic markers investigation for precision medicine. Along with the data, we also provide an R package, Met2Graph, to create metabolic graphs starting from GSMs and gene expression data.…”
Section: Background and Summarymentioning
confidence: 99%
“…The central role of metabolism in different aspects of pathophysiological mechanisms and their tune regulation make these networks particularly interesting for extracting knowledge and making predictions. For example, the analysis of hub nodes 28 and the comparison of topological properties between different context-specific networks 29 are valuable resources in diagnostic and prognostic markers investigation for precision medicine. Along with the data, we also provide an R package, Met2Graph, to create metabolic graphs starting from GSMs and gene expression data.…”
Section: Background and Summarymentioning
confidence: 99%
“…Metabolomic biomarkers constitute arguably the most expansive and diverse subcategory of diagnostic markers; at the time of writing, the Human Metabolome Database (HMDB) lists 220 945 metabolites that have been found within the human body, with associations to over 625 diseases. 176 In 2019, a disease-associated metabolite network (DMN) constructed using 245 diseases and 587 metabolites found 28 715 disease-metabolite associations. 177 Many metabolites are associated with one or more diseases such as diabetes, cancer, cardiovascular disease, and neurological abnormalities.…”
Section: Integrated Systemsmentioning
confidence: 99%
“…Recently, there have been important strides in improved detection thresholds, analyses, and linking biological pathways associated with diseases using metabolomics [49][50][51]. As they are likely to be an important biomarker of long-term maternal health, our objective was to characterize the metabolic alterations associated with CHD-affected pregnancies in this pilot study among post-partum women who participated in the National Birth Defects Prevention Study (NBDPS).…”
Section: Congenital Heart Defects (Chds) Affect Approximately 1% Of A...mentioning
confidence: 99%