The alpha subunit of IL-7 receptor (IL7R7α) is critical for the differentiation of T cells, specifically for the development and maintenance of γδT cells. Mutations in
IL7RA
are associated with Severe Combined Immunodeficiency (SCID). Infants with
IL7RA
deficiency can be identified through newborn screening program. We aimed at defining the immunological and genetic parameters that are directly affected by the
IL7RA
mutation on the immune system of five unrelated patients which were identified by our newborn screening program for SCID. The patients were found to have a novel identical homozygote mutation in
IL7RA
(n.c.120 C>G; p.F40L). Both surface expression of IL7Rα and functionality of IL-7 signaling were impaired in patients compared to controls. Structural modeling demonstrated instability of the protein structure due to the mutation. Lastly the
TRG
immune repertoire of the patients showed reduced diversity, increased clonality and differential CDR3 characteristics. Interestingly, the patients displayed significant different clinical outcome with two displaying severe clinical picture of immunodeficiency and three had spontaneous recovery. Our data supports that the presented
IL7RA
mutation affects the IL-7 signaling and shaping of the
TRG
repertoire, reinforcing the role of
IL7RA
in the immune system, while non-genetic factors may exist that attribute to the ultimate clinical presentation and disease progression.