Abstract:Experimental and theoretical values of the conformational entropy contribution ΔSc to the melting entropy of linear hydrocarbons agree fairly well; however, the chain model in which each bond has three possible conformations (g+, g−, and t) seems to be probably oversimplified. However, ratios of ΔSc to the actual number of bonds, which are effective in increasing the number of conformations, increase theoretically with chain length, whereas experimental values decrease. This latter behavior can be due to the i… Show more
“…The conformational entropy for such straight chain alkanes (containing N carbons) have been estimated on the basis of the experimental entropy of melting (Δ S melt ) and are in the range Δ S melt /( N − 2) ∼6.65−7.11 J mol -1 K -1 per torsion; these values are approximately the same as those calculated using eq 1. ,,,,,, Experimentally, there is only a small dependence of the value of Δ S melt /( N − 2) on chain length N : this observation is consistent with our finding in this work that the values of S tor within a straight chain alkane are relatively independent of one another. ,,,,,, …”
Section: Introductionsupporting
confidence: 86%
“…We believe that our model for Δ S tor will be useful in estimating the entropic components to the free energy for molecular processes that involve a change in the degree of restriction of single bonds with low torsional barriers. Examples of such processes (Figure ) may include binding of flexible substrates to enzymes, the chelate effect, reactions with enhanced rates due to intramolecularity, , cyclizations of saturated linear chains, adsorption of flexible, long-chain alkanes onto metallic surfaces to form a 2-dimensional monolayer, melting of solids into liquids and subliming of solids into gases, , transfer of flexible hydrophobic molecules from water into organic solvent, , self-assembly of multiple flexible particles to make a stable aggregate in solution, , folding of proteins, − interactions of divalent antibodies with polyvalent surfaces, binding of ligands (especially those that are polyvalent) to receptors, − and the interaction of a protein with a polymeric, well-hydrated protein-resistant surface. − …”
A non-quantum-mechanical, readily applied model is described that
estimates torsional entropy
(S
tor, the entropy associated with torsional
motions about a single bond) quantitatively. Using
this model, torsional entropies are evaluated for a variety of
molecular arrangements. Qualitative
trends emerge from these estimates that are consistent with chemical
intuition. The entropy
associated with torsional motion is not constant: values of
S
tor range from 0 to 15 J mol-1
K-1 and
are sensitive to details of the bond around which the torsion occurs
Important characteristics include
the bond length, the hybridization, the symmetry, the sizes of these
atoms or groups of atoms, and
the extent of conjugation to adjacent bonds. These values are
relatively independent of one another
in a number of important cases, and therefore the total change in
conformational entropy for a
given process may be estimated by adding changes in entropy due to
restricting torsions around
individual bonds. A model that permits quantitative
estimations of changes in conformational
entropy will be useful in a wide range of chemical and biochemical
applications that include the
design of tight-binding polyvalent pharmaceuticals and stable
multiparticlemolecular assemblies,
as well as in the kinetic and thermodynamic analysis of almost any
chemical reaction that involves
the restriction of the torsions of rotors.
“…The conformational entropy for such straight chain alkanes (containing N carbons) have been estimated on the basis of the experimental entropy of melting (Δ S melt ) and are in the range Δ S melt /( N − 2) ∼6.65−7.11 J mol -1 K -1 per torsion; these values are approximately the same as those calculated using eq 1. ,,,,,, Experimentally, there is only a small dependence of the value of Δ S melt /( N − 2) on chain length N : this observation is consistent with our finding in this work that the values of S tor within a straight chain alkane are relatively independent of one another. ,,,,,, …”
Section: Introductionsupporting
confidence: 86%
“…We believe that our model for Δ S tor will be useful in estimating the entropic components to the free energy for molecular processes that involve a change in the degree of restriction of single bonds with low torsional barriers. Examples of such processes (Figure ) may include binding of flexible substrates to enzymes, the chelate effect, reactions with enhanced rates due to intramolecularity, , cyclizations of saturated linear chains, adsorption of flexible, long-chain alkanes onto metallic surfaces to form a 2-dimensional monolayer, melting of solids into liquids and subliming of solids into gases, , transfer of flexible hydrophobic molecules from water into organic solvent, , self-assembly of multiple flexible particles to make a stable aggregate in solution, , folding of proteins, − interactions of divalent antibodies with polyvalent surfaces, binding of ligands (especially those that are polyvalent) to receptors, − and the interaction of a protein with a polymeric, well-hydrated protein-resistant surface. − …”
A non-quantum-mechanical, readily applied model is described that
estimates torsional entropy
(S
tor, the entropy associated with torsional
motions about a single bond) quantitatively. Using
this model, torsional entropies are evaluated for a variety of
molecular arrangements. Qualitative
trends emerge from these estimates that are consistent with chemical
intuition. The entropy
associated with torsional motion is not constant: values of
S
tor range from 0 to 15 J mol-1
K-1 and
are sensitive to details of the bond around which the torsion occurs
Important characteristics include
the bond length, the hybridization, the symmetry, the sizes of these
atoms or groups of atoms, and
the extent of conjugation to adjacent bonds. These values are
relatively independent of one another
in a number of important cases, and therefore the total change in
conformational entropy for a
given process may be estimated by adding changes in entropy due to
restricting torsions around
individual bonds. A model that permits quantitative
estimations of changes in conformational
entropy will be useful in a wide range of chemical and biochemical
applications that include the
design of tight-binding polyvalent pharmaceuticals and stable
multiparticlemolecular assemblies,
as well as in the kinetic and thermodynamic analysis of almost any
chemical reaction that involves
the restriction of the torsions of rotors.
“…(For convenience, we will not write the angular brackets for changes such as AUR.) Similarly, intermolecular van der Waals energies, UvdW, are also well-defined sums over states (Uvdw) = S(Uvdw)aPs (8) where UvdW is calculated for each state s in the usual way. Even though we do not attempt, in this paper, to perform the sums over states from first principles, it is clear that the quantities AU¡ have a precise and well-defined meaning in statistical mechanics.…”
“…In this work, we have just concentrated in investigating the volume dependence of γ in the liquid state. In treating the transition entropy of real systems, contributions from the so-called communal entropy as well as other residual entropies are often considered by introducing an extra term Δ S d in eq 1: ,, …”
Section: Discussionmentioning
confidence: 99%
“…The entropy separation according to eqs 1 and 2 is a hypothetical process assuming that the volume of the isotropic fluid may be compressed to that of the solid state without affecting the configurational part of the entropy of chain molecules . The validity of such an assumption has been questioned by several authors. − Wunderlich et al pointed out that the volume dependence of γ during the compression from the liquid to the solid volume may not be negligible and thereby leads to a significant underestimate of the Δ S V term. They proposed to adopt an integration form such as to replace eq 1.…”
A conventional method of estimating conformational entropy change at the melting point of polymers has been set forth in Mandelkern's book. The entropy separation according to this method involves a hypothetical assumption that the volume of the isotropic fluid may be compressed to that of the solid state without affecting the configurational part of the entropy of molecules. In this work, we have extensively examined the volume dependence of thermal pressure coefficient γ ) (δP/δT) V ) (δS/δV)T of n-undecane. Molecular dynamic simulations were performed using the software package Insight II/Discover. In the standard calculation, a cubic box containing 30 n-undecane molecules was used under the conventional periodic boundary conditions. The experimental observations were well reproduced by the MD simulation performed as above, and accordingly the γ vs specific volume (vsp) relations derived from the simulation are favorably compared with those obtained from the experimental PVT data. The γ values remain quite insensitive to vsp over a wide range at given temperatures. Values of the trans fraction were found to decrease with an increase in temperature, while they tend to remain quite insensitive to pressure (0-200 MPa). It was concluded on this basis that the aforementioned treatment of the volume change at the phase transition seems to be supported by the present analysis.
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