the Hippo pathway is a central regulator of organ size and a key tumor suppressor via coordinating cell proliferation and death. initially discovered in Drosophila, the Hippo pathway has been implicated as an evolutionarily conserved pathway in mammals; however, how this pathway was evolved to be functional from its origin is still largely unknown. In this study, we traced the Hippo pathway in premetazoan species, characterized the intrinsic functions of its ancestor components, and unveiled the evolutionary history of this key signaling pathway from its unicellular origin. In addition, we elucidated the paralogous gene history for the mammalian Hippo pathway components and characterized their cancer-derived somatic mutations from an evolutionary perspective. Taken together, our findings not only traced the conserved function of the Hippo pathway to its unicellular ancestor components, but also provided novel evolutionary insights into the Hippo pathway organization and oncogenic alteration.A long-standing question in developmental biology is how metazoan species acquired the ability to precisely control their tissue/organ size 1 . This intriguing phenomenon could be traced to some non-metazoan organisms, since their aggregative behaviors can be similarly regulated 2-4 . Initially discovered in Drosophila, the Hippo pathway is a highly conserved pathway known for its crucial role in organ size control via restricting cell proliferation and inducing apoptosis 5-9 , shedding light on this fundamental question in evolution.In Drosophila, the core components of the Hippo pathway comprise two serine/threonine kinases Hippo 10-14 and Warts 15,16 , adaptor proteins Salvador 17,18 and Mats 19 , a transcriptional co-activator Yorkie 20 and a transcriptional factor Scalloped 21-23 . Together with Salvador, Hippo phosphorylates and activates Warts, which in turn phosphorylates Yorkie 24,25 . Yorkie can shuttle between the cytoplasm and nucleus, a process tightly controlled by the Warts-mediated phosphorylation 24,25 . Upon phosphorylation, Yorkie is recognized by 14-3-3 proteins and sequestered in the cytoplasm 24,25 . When Hippo signaling is inactivated, Yorkie translocates into the nucleus, where it forms a complex with Scalloped to initiate the transcription of genes involved in proliferation and anti-apoptosis, two critical events required for tissue/organ growth. The Hippo/Salvador-Warts/Mats kinase cascade can be regulated by multiple upstream regulators. Among them, Merlin 26 , Kibra 27-29 and Fat 30-32 have been implicated to play conserved roles in the mammalian Hippo pathway. Moreover, Hippo is not absolutely required for the phosphorylation and activation of Warts, since another two serine/threonine kinases Happyhour and Misshapen were also found responsible for Warts activation in both Drosophila and mammals [33][34][35] , highlighting the complexity of the Hippo pathway regulation.Although multiple Hippo pathway-related studies have been carried out in species from Drosophila to mammals for decades, its compone...