2023
DOI: 10.1093/bib/bbad486
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Comprehensive assessment of protein loop modeling programs on large-scale datasets: prediction accuracy and efficiency

Tianyue Wang,
Langcheng Wang,
Xujun Zhang
et al.

Abstract: Protein loops play a critical role in the dynamics of proteins and are essential for numerous biological functions, and various computational approaches to loop modeling have been proposed over the past decades. However, a comprehensive understanding of the strengths and weaknesses of each method is lacking. In this work, we constructed two high-quality datasets (i.e. the General dataset and the CASP dataset) and systematically evaluated the accuracy and efficiency of 13 commonly used loop modeling approaches … Show more

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