Complete plastome sequence of <i>Lilium pardalinum</i> Kellogg (Liliaceae)

Kim, Hyoung Tae; Zale, Peter J.; Lim, Ki-Byung

doi:10.1080/23802359.2018.1463826

Cited by 2 publications

(3 citation statements)

References 8 publications

(16 reference statements)

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“…Unfortunately, the phylogenetic position of the section using both markers was not resolved or was supported weekly. On the other hand, Kim et al [47] suggested that L. philadelphicum seems to be distinguishable from other species in the section based on phylogenomics using plastome sequences. This relationship is well supported by the 28 species trees constructed in this study.…”

Section: The Polyphyly Of Pseudoliriummentioning

confidence: 99%

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New Insights on Lilium Phylogeny Based on a Comparative Phylogenomic Study Using Complete Plastome Sequences

Kim

Lim

Kim

2019

Plants

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The genus Lilium L. is widely distributed in the cold and temperate regions of the Northern Hemisphere and is one of the most valuable plant groups in the world. Regarding the classification of the genus Lilium, Comber’s sectional classification, based on the natural characteristics, has been primarily used to recognize species and circumscribe the sections within the genus. Although molecular phylogenetic approaches have been attempted using different markers to elucidate their phylogenetic relationships, there still are unresolved clades within the genus. In this study, we constructed the species tree for the genus using 28 Lilium species plastomes, including three currently determined species (L. candidum, L. formosanum, and L. leichtlinii var. maximowiczii). We also sought to verify Comber’s classification and to evaluate all loci for phylogenetic molecular markers. Based on the results, the genus was divided into two major lineages, group A and B, consisting of eastern Asia + Europe species and Hengduan Mountains + North America species, respectively. Sectional relationships revealed that the ancestor Martagon diverged from Sinomartagon species and that Pseudolirium and Leucolirion are polyphyletic. Out of all loci in that Lilium plastome, ycf1, trnF-ndhJ, and trnT-psbD regions are suggested as evaluated markers with high coincidence with the species tree. We also discussed the biogeographical diversification and long-distance dispersal event of the genus.

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Section: The Polyphyly Of Pseudoliriummentioning

confidence: 99%

“…Reads exceeding 50 bp in length were extracted and used as raw reads after this step. Raw reads were mapped to the plastome sequence of Lilium pardalinum [47] with medium-low sensitivity. Reads were aligned to the reference then de novo assembled with zero mismatches and gaps among the reads to generate contigs.…”

Section: Sequencing Assembly and Annotationmentioning

confidence: 99%

New Insights on Lilium Phylogeny Based on a Comparative Phylogenomic Study Using Complete Plastome Sequences

Kim

Lim

Kim

2019

Plants

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“…This pattern is also consistent with hybridization. Based on chloroplast genome sequences of the two parental species (Kim and Lim 2018; Kim et al 2018), single nucleotide differences were expected in rbc L and the spacer between the psa I and ycf 4 genes. In order to determine the putative maternal parent of the hybrid, these two chloroplast (cpDNA) loci were sequenced.…”

Section: Oregonmentioning

confidence: 99%