Complete nucleotide sequence of mitochondrial DNA in White Leghorn and White Plymouth Rock chickens

Nishibori, Masahide; Hanazono, Makoto; Yamamoto, Yoshio; Tsudzuki, Masaoki; Yasue, Hiroshi

doi:10.1046/j.1344-3941.2003.00136.x

Cited by 36 publications

(21 citation statements)

References 8 publications

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“…Gallus gallus was selected as the outgroup. The resulting tree shows similar relationships to previous studies (Nishibori et al 2003;Yamamoto et al 2005;Slack et al 2006;Slack et al 2007;Gibb et al 2013;Lounsberry et al 2015;Han et al 2016;Eo and An 2016;Kim and Park 2016;Yang et al 2016;Thomas et al 2017;Zhang et al 2017).…”

supporting

confidence: 87%

The complete mitochondrial genome of the Band-rumped Storm Petrel (Oceanodroma castro)

Antaky

Kitamura

Knapp

et al. 2019

Mitochondrial DNA Part B

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In this study, we report the complete mitochondrial genome sequence of the Endangered Bandrumped Storm Petrel (Oceanodroma castro), a globally distributed seabird. The mitogenome is 17,023 bp in length and has a base composition of A (30.5%), T (24.0%), C (31.2%), and G (14.3%). Similar to other avifauna, it contains 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region, with arrangement and orientation identical to that of other seabirds. To our knowledge, this is the first complete mitochondrial genome sequenced within the family Hydrobatidae, or storm petrels, and will aid in taxonomic studies.

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supporting

confidence: 87%

The complete mitochondrial genome of the Band-rumped Storm Petrel (Oceanodroma castro)

Antaky

Kitamura

Knapp

et al. 2019

Mitochondrial DNA Part B

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“…DNA was extracted from all the blood samples using the recommended protocol described by Sambrook and Russell (2000) and Nishibori et al (2002Nishibori et al ( , 2003. The mtDNA fragments were specifically amplified from mitochondrial genome in long PCR using the KOD-FX polymerase Journal of Poultry Science, 49 (4) 238 Samples from the districts of Dhaka and Chittagong division) (TOYOBO, Osaka Japan) with specimen DNA as a template and the LA-PCR primer sets, following the procedure recommended by the manufacturer.…”

Section: Extraction and Amplification Of Mitochondrial Dna And D-loomentioning

confidence: 99%

“…A few works have been done to evaluate the genetic variability and interrelationship among red jungle fowls, Myanmar indigenous and commercial chickens based on the complete sequence of mtDNA genome (Nishibori et al, 2002;2003;2004;2005;Oka et al, 2007). Considering the above points, the complete sequence of the mitochondrial D-loop was used to investigate the phylogenic relationship within, and between the native chickens, Red junglefowls from Bangladesh, and neighboring Asian countries to identify unique population for characterization, conservation and further improvement of native chicken genetic resource.…”

Section: Introductionmentioning

confidence: 99%

Phylogenetic Analysis of Native Chicken from Bangladesh and Neighboring Asian Countries Based on Complete Sequence of Mitochondrial DNA D-loop Region

Islam

Nishibori

2012

J. Poult. Sci.

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The complete mitochondrial D-loop region was sequenced for a total of 18 individuals of Bangladeshi native chickens (BNC); full feathered (nana) (n＝7), naked neck (Nana) (n＝8) and Red junglefowl (RJF) (n＝3). The alignment of mitochondrial D-loop sequence of these chicken populations with 39 reference sequences from DNA databank; White Leghorn, G. g. murghi, G. g. bankiva, G. g. spadiceus, G. g. gallus and other Asiatic chickens was done to identify the phylogenetic position of BNC for the conservation and improvement of chicken genetic resource. The nucleotide variation of sequence among haplotypes for within and between populations of BNC supported the phenotypic variation of individual of the populations. Phylogenetic analysis showed that 57 individuals were grouped into 6 clades. Of the BNC populations, 6 nana, 7 Nana and 2 RJF individuals (83.3%) were closely related with each other and only 1 nana and 1 Nana (11%), and 1 RJF (5.5%) individuals were divergent from them. Therefore, the phylogenetic tree showed low genetic distance and close relationship within and between the chicken populations of Bangladesh, which were closely related with G. g. murghi of Indian origin, and also related with G. g. bankiva, G. g. gallus implying the origin of gene flow to Bangladesh. The genetic information from this study may serve as an initial step to make future plans to assess more molecular information on genetic diversity for the characterization, conservation and improvement of valuable chicken genetic resource of Bangladesh.

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“…Although some strain have indicated a high capacity for consumption of NSPs in the diets in comparison to others, still, high production hens need to meet a good and high level of diet sources. On the other hand, proliferation of intestinal cells could be changed by some fiber diets, thereby promoting cell by increasing DNA quantity and protein synthesis (Sonoyama et al, 1994;Iji et al, 2001;Olasunkanmi et al, 2003;Nishibori et al, 2003). Reduction in rate of digestion and absorption could occur due to decrease in protein synthesis in small intestine (Sell et al, 1991).…”

Section: Discussionmentioning

confidence: 99%

Intestinal DNA concentration and protein synthesis in response to low quality diets in two strains of Leghorn layers

Saki¹,

Zamani²,

Haghighat³

et al. 2011

Afr. J. Biotechnol.

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Performance, protein synthesis and mucosal DNA in small intestine of Leghorn hens may be affected by low quality feedstuff. An experiment was conducted in completely randomized design (CRD) in 2 × 2 factorial arrangement. Main factors included diets containing 20 and 40 % barley and black and blue strains of leghorn. Layer performance was recorded weekly up to eight weeks. Egg production (%), egg mass and egg number were significantly higher in black strain leghorn on 20% barley diet than blue strain with 40% barley diet (P<0.05). Treatments blue × 40% barley and black × 20% barley showed lowest and highest egg production percentage, egg mass and egg number, respectively (P<0.05). The lowest protein synthesis in small intestine was shown in blue × 40% barley treatment group. Small intestine mucosal DNA quantity in blue strain was significantly higher than that in black strain (P<0.05). In contrast, protein synthesis in blue strain was lower than that in black strain (P<0.05). It was concluded that lower performance in blue × 40% treatment group could be related to lower protein synthesis in small intestine in blue strain, and this may be due to the high barley (40%) contained in diet.

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Complete nucleotide sequence of mitochondrial DNA in White Leghorn and White Plymouth Rock chickens

Cited by 36 publications

References 8 publications

The complete mitochondrial genome of the Band-rumped Storm Petrel (Oceanodroma castro)

The complete mitochondrial genome of the Band-rumped Storm Petrel (Oceanodroma castro)

Phylogenetic Analysis of Native Chicken from Bangladesh and Neighboring Asian Countries Based on Complete Sequence of Mitochondrial DNA D-loop Region

Intestinal DNA concentration and protein synthesis in response to low quality diets in two strains of Leghorn layers

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