Complete Mitochondrial Genome Sequences and the Phylogeny of Cranes (Gruiformes: Gruidae)

Krajewski, Carey; Sipiorski, Justin T.; Anderson, Frank E.

doi:10.1525/auk.2009.09045

Cited by 59 publications

(55 citation statements)

References 53 publications

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“…40,918,448 clean reads were de novo assembly by using commercial software (Geneious V9, Auckland, New Zealand) to produce a single, circular form of complete mitogenome. The total length of its mitogenome was 16,747 bp, with a genome size similar to other research (Krajewsk et al 2010), but more details on that study. Compared with the current mitogenome sequences of Siberian Crane, more than 1400 bases substitution in the Siberian Crane mitogenome of China we sequenced.…”

supporting

confidence: 70%

Complete mitochondrial genome of a Siberian Crane (Grus leucogeranus)

Wang

Zhao

et al. 2018

Mitochondrial DNA Part B

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The complete mitochondrial genome (mtDNA) of hemocyte from Siberian Crane ( Grus leucogeranus ) was sequenced using high-throughput genetic sequencing, and mitochondrial genome was assembled using MITObim tools according complete mitochondrial genome of Grus leucogeranus (NCBI Reference Sequence: NC_020574.1). The assembled mitogenome, consisting of 16,747 bp, has unique 14 protein-coding genes (PCGs), 22 transfer RNAs, and two ribosomal RNAs genes. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for Siberian Crane phylogeny.

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supporting

confidence: 70%

Complete mitochondrial genome of a Siberian Crane (Grus leucogeranus)

Wang

Zhao

et al. 2018

Mitochondrial DNA Part B

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“…The 37 genes in the mitochondrial genome include 13 protein-coding genes, 22 tRNA-encoding genes, 2 rRNA-encoding genes, and a regulatory region (D-loop). Because the mitochondrial genome has several unique characteristics, including its small size, abundance in animal tissues, strict orthology of encoded genes, and uniparental inheritance, mtDNA is a reliable and easy-to-use phylogenetic marker (Kan et al, 2010;Krajewski et al, 2010;Li et al, 2010;Md-Zain et al, 2010;Morin et al, 2010). Many phylogenetic trees have been constructed for animals.…”

Section: Introductionmentioning

confidence: 99%

Complete mitochondrial genomes reveal phylogeny relationship and evolutionary history of the family Felidae

Zhang

Zhang²

2013

Genet. Mol. Res.

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ABSTRACT. Many mitochondrial DNA sequences are used to estimate phylogenetic relationships among animal taxa and perform molecular phylogenetic evolution analysis. With the continuous development of sequencing technology, numerous mitochondrial sequences have been released in public databases, especially complete mitochondrial DNA sequences. Using multiple sequences is better than using single sequences for phylogenetic analysis of animals because multiple sequences have sufficient information for evolutionary process reconstruction. Therefore, we performed phylogenetic analyses of 14 species of Felidae based on complete mitochondrial genome sequences, with Canis familiaris as an outgroup, using neighbor joining, maximum likelihood, maximum parsimony, and Bayesian inference methods. The consensus phylogenetic trees supported the monophyly of Felidae, and the family could be divided into 2 subfamilies, Felinae and Pantherinae. The genus Panthera and species tigris were also studied in detail. Meanwhile, the divergence of this family was estimated by phylogenetic analysis using the Bayesian method with a relaxed molecular clock, and the results shown were consistent with previous studies. In summary, the evolution of Felidae was reconstructed by phylogenetic analysis Phylogenetic analysis of Felidae using mitochondrial genomes based on mitochondrial genome sequences. The described method may be broadly applicable for phylogenetic analyses of anima taxa.

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“…The mitochondrial genome contains 37 genes, including 13 protein-coding genes, 22 transfer RNA genes, two rRNA genes, and the control region (D-loop). The excellent characteristics of the mitochondrial genome, such as the small size of the molecule, its abundance in animal tissues, the strict orthology of encoded genes, and its uniparental inheritance make mitochondrial DNA (mtDNA) a reliable and easy-to-use phylogenetic marker (Chan et al, 2010;Kan et al, 2010;Krajewski et al, 2010;Li et al, 2010;MdZain et al, 2010;Morin et al, 2010). In animals, many phylogenetic trees have been re-constructed from the sequence of single genes or elements-for example, Cyb or the D-loop region.…”

Section: Introductionmentioning

confidence: 99%

Phylogeny and evolution of Cervidae based on complete mitochondrial genomes

Zhang¹,

Zhang²

2012

Genet. Mol. Res.

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ABSTRACT. Mitochondrial DNA sequences can be used to estimate phylogenetic relationships among animal taxa and for molecular phylogenetic evolution analysis. With the development of sequencing technology, more and more mitochondrial sequences have been made available in public databases, including whole mitochondrial DNA sequences. These data have been used for phylogenetic analysis of animal species, and for studies of evolutionary processes. We made phylogenetic analyses of 19 species of Cervidae, with Bos taurus as the outgroup. We used neighbor joining, maximum likelihood, maximum parsimony, and Bayesian inference methods on whole mitochondrial genome sequences. The consensus phylogenetic trees supported monophyly of the family Cervidae; it was divided into two subfamilies, Plesiometacarpalia and Telemetacarpalia, and four tribes, Cervinae, Muntiacinae, Hydropotinae, and Odocoileinae. The divergence times in these families were estimated by phylogenetic analysis using the Bayesian method with a relaxed molecular clock method; the results were consistent with those of previous studies. We concluded that the evolutionary structure of the family Cervidae can be reconstructed by phylogenetic analysis based on whole mitochondrial genomes; this method could be used broadly in phylogenetic evolutionary analysis of animal taxa.

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Complete Mitochondrial Genome Sequences and the Phylogeny of Cranes (Gruiformes: Gruidae)

Cited by 59 publications

References 53 publications

Complete mitochondrial genome of a Siberian Crane (Grus leucogeranus)

Complete mitochondrial genome of a Siberian Crane (Grus leucogeranus)

Complete mitochondrial genomes reveal phylogeny relationship and evolutionary history of the family Felidae

Phylogeny and evolution of Cervidae based on complete mitochondrial genomes

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