Complete mitochondrial genome of <i>Tetraclita squamosa squamosa</i> (Sessilia: Tetraclitidae) from China and phylogeny within Cirripedia

Feng, Meiping; Cao, Wenhao; Wang, Chunsheng; Lin, Shiquan; Sun, Dong; Zhou, Yadong

doi:10.1080/23802359.2020.1765705

Cited by 3 publications

(3 citation statements)

References 20 publications

(32 reference statements)

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“… 2019 ; Feng et al. 2020 ) ( Figure 1 ). The sequencing of more mitochondrial genomes data shall further our understanding on the phylogeny within Cirripedia.…”

mentioning

confidence: 97%

The first mitochondrial genome of Tetraclita kuroshioensis (Crustacea: Sessilia) from China: insight into the phylogeny within Cirripedia

Ji¹,

Ge²,

Mao³

et al. 2021

Mitochondrial DNA Part B

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We determined the first mitochondrial genome of Tetraclita kuroshioensis from China. The mitochondrial genome of T. kuroshioensis was found to be 15,175 bp in length and consisted of 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs. The longest non-coding region was 425 bp in length. Phylogenetic analysis showed that T. kuroshioensis clustered with T. serrata and then clustered with T. squamosa squamosa with high bootstrap value (BP = 100). In the future, sequencing of additional mitochondrial genomes should provide additional insights into the deep phylogeny of Cirripedia.

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“… 2019 ; Feng et al. 2020 ) ( Figure 1 ). The sequencing of more mitochondrial genomes data shall further our understanding on the phylogeny within Cirripedia.…”

mentioning

confidence: 97%

The first mitochondrial genome of Tetraclita kuroshioensis (Crustacea: Sessilia) from China: insight into the phylogeny within Cirripedia

Ji¹,

Ge²,

Mao³

et al. 2021

Mitochondrial DNA Part B

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“…The following sequences were downloaded from GenBank and used for reference: 29 of Tetraclita spp., three of Tetraclitella divisa, three of Tesseropora rosea, one of Yamaguchiella coerulescens, and one of Balanus (Chan et al, 2007a,b;Tsang et al, 2007Tsang et al, , 2012Tsang et al, , 2015Zardus et al, 2013;Shen et al, 2015;Song et al, 2017;Feng et al, 2020;Ji et al, 2021; Supplementary Table 1).…”

Section: Dna Barcoding For Species Identificationmentioning

confidence: 99%

“…The phylogenetic trees were inferred from CO1 and 12S rRNA concatenated sequences using Bayesian inferences (BI) and maximum likelihood (ML) in MrBayes 3.2.6 and W-IQ-TREE, respectively (Ronquist and Huelsenbeck, 2003;Nguyen et al, 2015;Trifinopoulos et al, 2016). Selected sequences downloaded from GenBank-including Tetraclita japonica (AB126701), T. kuroshioensis (MW298526), T. rufotincta (KY865100), T. serrata (KJ434948), T. squamosa (MT232759), T. rosea (KY865099), and T. divisa (KJ754822)-were included in the analysis (Shen et al, 2015;Song et al, 2017;Tsang et al, 2017;Cai et al, 2018;Feng et al, 2020;Ji et al, 2021). The sequences of Balanus balanus (KM660676), Chthamalus antennatus (KP294312), and Pollicipes polymerus (AY456188) were also used as outgroups (Lavrov et al, 2004;Shen et al, 2016).…”

Section: Phylogenetic Inference and Divergence Time Estimationmentioning

confidence: 99%

Biogeography and Biodiversity of the Intertidal Barnacle Tetraclita Species in the Gulf of Thailand and Andaman Sea – Influences of Oceanographic Currents and Pleistocene Glaciations

et al. 2022

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The present study investigated the phylogeography of the intertidal barnacle Tetraclita in the Gulf of Thailand ecoregion (Sunda Shelf Province in the Pacific) and the Andaman Sea Coral Coast ecoregion (Andaman Province in the Indian Ocean) in Thailand’s waters. Tetraclita species were identified by a combined morphological and molecular approach using mitochondrial gene fragments (CO1 and 12S rRNA). Tetraclita singaporensis is a major occupiers on the Andaman coast but is sparse in the western Gulf of Thailand. Tetraclita squamosa inhabits almost all of our collection sites in the Gulf of Thailand but has a very low abundance in the Andaman Sea. Tetraclita kuroshioensis has two genetically distinct populations, one in the Andaman Sea and the other in the West Pacific region. S-DIVA analysis showed that the most recent common ancestor (MRCA) of T. kuroshioensis was distributed in both the Andaman Sea and West Pacific region, with a relative probability of 63%; the analysis further identified two molecular subclades, one on each side of the Sunda Shelf by vicariance about 0.53 million years ago, far before the Last Glacial Maximum (LGM). The MRCA of T. squamosa was based in the West Pacific region (relative probability: 90%), and dispersed into the Andaman Sea after the LGM. The MRCA of T. singaporensis was in the Andaman Sea (relative probability: 89.5%) and dispersed into the Gulf of Thailand via monsoonal currents through the Malacca Strait after the LGM. Presently, T. singaporensis is absent from the West Pacific region, further supporting its origin in the Andaman Sea. The distribution of intertidal barnacles in the Sunda Shelf and Andaman provinces is a result of the interplay between geological events and present day oceanographic currents.

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The Mitochondrial Genome of the Globally Invasive Barnacle Megabalanus coccopoma Darwin 1854 (Crustacea: Balanomorpha): Rearrangement and Phylogenetic Consideration within Balanomorpha

Zhang¹,

Cai²,

Ji³

et al. 2023

Diversity

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Megabalanus coccopoma (Darwin, 1854) is a globally invasive species in Balanomorpha (Crustacea). This species is a model organism for studying marine pollution and ecology. However, its mitogenome remains unknown. The mitogenome sequencing of M. coccopoma is completed in the present study. It has a 15,098 bp in length, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), along with a putative regulatory area. A substantial A+T bias was observed in the genome composition (68.2%), along with a negative AT (0.82) and GC (−0.136) skew. Compared to the gene sequence of the ground model of pan-crustacea, 13 gene clusters (or genes), such as 10 tRNAs and 3 PCGs, were observed in a different order. This was in line with the previously observed large-scale gene rearrangements of Balanomorpha. Among the 37 genes, the gene cluster (M-nad2-W-cox1-L2-cox2-D-atp8-atp6-cox3-G- nad3-R-N-A-E-S1) Balanomorpha was conserved. Furthermore, phylogeny analysis indicated that the existing Balanomorpha species family was divided into nine rearrangement patterns, supporting the polyphyly of Balanoidea.

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Complete mitochondrial genome of Tetraclita squamosa squamosa (Sessilia: Tetraclitidae) from China and phylogeny within Cirripedia

Cited by 3 publications

References 20 publications

The first mitochondrial genome of Tetraclita kuroshioensis (Crustacea: Sessilia) from China: insight into the phylogeny within Cirripedia

The first mitochondrial genome of Tetraclita kuroshioensis (Crustacea: Sessilia) from China: insight into the phylogeny within Cirripedia

Biogeography and Biodiversity of the Intertidal Barnacle Tetraclita Species in the Gulf of Thailand and Andaman Sea – Influences of Oceanographic Currents and Pleistocene Glaciations

The Mitochondrial Genome of the Globally Invasive Barnacle Megabalanus coccopoma Darwin 1854 (Crustacea: Balanomorpha): Rearrangement and Phylogenetic Consideration within Balanomorpha

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