Complete mitochondrial DNA sequence of the Japanese flying fish Cypselurus hiraii

Nagase, Mitsutoshi; Aimi, Tadanori; Suginaka, Katsuaki; Kitamoto, Yutaka; Morinaga, Tsutomu

doi:10.1111/j.1444-2906.2005.01045.x

Cited by 21 publications

(18 citation statements)

References 14 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The total length of the complete mitochondrial genome of S. meridionalis and S. asotus was 16,526 and 16,525 bp, respectively. The gene order and gene coding strand of S. meridionalis and S. asotus were identical to those of the Atlantic cod, the Javeline goby, and the Japanese flying fish (Johansen and Bakke, 1996;Kim et al, 2004;Nagase et al, 2005), consisting of 2 rRNAs, 22 tRNAs, 13 protein-coding genes, and a control region (Figure 1 and Table 3). The overall base composition of the H-strand was A: 30.3%, C: 28.7%, G: 16.0%, and T: 25.0% in S. meridionalis, and A: 30.5%, C: 27.9%, G: 15.8%, and T: 25.8% in S. asotus.…”

Section: Structure Of the Mitochondrial Genomementioning

confidence: 94%

Complete mitochondrial genome of the Southern catfish (Silurus meridionalis Chen) and Chinese catfish (S. asotus Linnaeus): Structure, phylogeny, and intraspecific variation

Wang¹,

Xu²,

Wang³

2015

Genet. Mol. Res.

View full text Add to dashboard Cite

ABSTRACT. The complete mitochondrial genome of the Southern catfish (Silurus meridionalis) and the Chinese catfish (S. asotus), was determined using the long and accurate polymerase chain reaction (LA-PCR) method. The mitochondrial DNA nucleotide sequences of S. meridionalis and S. asotus were compared with those of 47 other catfish species in the same order. The total length of mitochondrial DNA for S. meridionalis and S. asotus was 16,526 and 16,525 bp, respectively, and included 13 proteincoding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a noncoding control region. This mitochondrial gene arrangement is identical to that observed in other Siluriformes. To determine the relative phylogenetic positions of S. meridionalis and S. asotus, and to discover phylogenetic relationships among 24 families of Siluriformes, analyses were conducted, based on mitochondrial DNA, 12S ribosomal RNA, 16S ribosomal RNA, and 13 protein-coding gene sequence data sets. Phylogenetic analyses were congruent with a basal split of the order into Clupeiformes, Characiformes, Cypriniformes, and Siluriformes, and supported a closer relationship of the Southern catfish (family Siluridae) and the Chinese catfish (family Siluridae) to Pimelodidae than to Bagridae. We concluded that these two species are part of a molecular clade that is different from that proposed in recent studies, in which Amblycipitidae appears as a sister group. Our results showed Amblycipitidae appearing as the most basal extant, and Bagridae appearing as a sister group of Cranoglanididae and Pangasiidae. The Siluriformes showed close phylogenetic relationship to the Characiformes.

show abstract

Section: Structure Of the Mitochondrial Genomementioning

confidence: 94%

Complete mitochondrial genome of the Southern catfish (Silurus meridionalis Chen) and Chinese catfish (S. asotus Linnaeus): Structure, phylogeny, and intraspecific variation

Wang¹,

Xu²,

Wang³

2015

Genet. Mol. Res.

View full text Add to dashboard Cite

show abstract

“…In our previous report, we established a PCR-RFLP method for the qualitative analysis of flying fish in ago-noyaki and various processed fishery products [7,8]. PCR-RFLP has been frequently used for the authentication of other processed fish products; i.e., to distinguish between tuna (Thunnus thynnus) and bonito [9], and for the authentication of Atlantic mackerel Scomber scombrus in commercial canned products [10].…”

Section: Introductionmentioning

confidence: 99%

Quantification of relative flying fish paste content in the processed seafood ago-noyaki using real-time PCR

Nagase

Hidaka

et al. 2010

Fish Sci

Self Cite

View full text Add to dashboard Cite

Real-time polymerase chain reaction (PCR) analysis of the 3 0 -portion of the mitochondrial 16S RNA gene (rDNA) coding sequence was used to determine flying fish paste in ago-noyaki. We quantified the amount of flying fish paste in ago-noyaki samples using flying fishspecific primers (Tobi16SF3/Tobi16SR) and universal primers (Univ16SF2/Univ16SR2). Using real-time PCR of standard ago-noyaki, a standard equation was obtained (y = 1.08x -3.20; R 2 = 0.977). This equation was then used to estimate the relative flying fish paste contents of eight commercially available ago-noyaki and two similar products. These results verified that the ago-noyaki products that had already been labeled with the E-mark deserved this status.

show abstract

“…The analyzed fish species are those that are usually used in ago-noyaki production. Besides flying fishes, these are [13], Japanese jack mackerel (T. japonicus, AP003091) [14], tropical twowing flying fish (Exocoetus volitans, AP002933) [15], and Alaska pollock (T. chalcogramma, AB182300) [16]] were designed from the conserved regions of the nucleotide sequence. PCR was conducted in 100-ll reaction volumes.…”

Section: Fish Sample and Dna Extractionmentioning

confidence: 99%

Authentication of flying-fish-meal content of processed food using PCR-RFLP

Nagase

Maeta²,

Aimi

et al. 2009

Fish Sci

Self Cite

View full text Add to dashboard Cite

Nucleotide sequence and polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) analysis of the 3 0 -portion of the mitochondrial 16S RNA gene (rDNA) coding sequence were used to differentiate between flying fishes and other fishes that are frequently used in ago-noyaki production. In this study, we successfully distinguished between flying fishes and the other fishes by combining amplified DNA fragments with universally designed primers and digesting the PCR products with AfaI and MfeI restriction endonucleases. PCR-RFLP of 15 ago-noyaki, 2 noyaki, and 8 other processed flying-fish products were analyzed to authenticate flyingfish content among processed seafood products. After digestion of the PCR products with both enzymes, we found that all ago-noyaki and processed flying fish products contained either two or three DNA fragments of *200, 300, and 530 bp, and noyaki samples (which do not contain flying fish) contained only one fragment of *530 bp. Here, we present a new procedure to confirm the content of flying-fish meal in ago-noyaki.

show abstract

Complete mitochondrial DNA sequence of the Japanese flying fish Cypselurus hiraii

Cited by 21 publications

References 14 publications

Complete mitochondrial genome of the Southern catfish (Silurus meridionalis Chen) and Chinese catfish (S. asotus Linnaeus): Structure, phylogeny, and intraspecific variation

Complete mitochondrial genome of the Southern catfish (Silurus meridionalis Chen) and Chinese catfish (S. asotus Linnaeus): Structure, phylogeny, and intraspecific variation

Quantification of relative flying fish paste content in the processed seafood ago-noyaki using real-time PCR

Authentication of flying-fish-meal content of processed food using PCR-RFLP

Contact Info

Product

Resources

About