2017
DOI: 10.1128/genomea.01107-17
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Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391

Abstract: Here we report the complete genome sequence of Streptococcus agalactiae strain 874391. This serotype III isolate is a member of the hypervirulent sequence type 17 (ST-17) lineage that causes a disproportionate number of cases of invasive disease in humans and mammals. A brief historical context of the strain is discussed.

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Cited by 14 publications
(20 citation statements)
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References 25 publications
(23 reference statements)
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“…Primers (Supplementary Table 2) were designed using Primer3 Plus (24, 25) to quantify transcripts using Universal SYBR Green Supermix (Bio-Rad) using a Quantstudio 6 Flex (Applied Biosystems) system in accordance with MIQE guidelines (26). Standard curves were generated using five point serial dilutions of genomic DNA (5-fold) from WT S. agalactiae 874391 (27). Expression ratios were calculated using C T values and primer efficiencies as described elsewhere (28) using dnaN , encoding DNA polymerase III β-subunit as housekeeper.…”
Section: Methodsmentioning
confidence: 99%
See 1 more Smart Citation
“…Primers (Supplementary Table 2) were designed using Primer3 Plus (24, 25) to quantify transcripts using Universal SYBR Green Supermix (Bio-Rad) using a Quantstudio 6 Flex (Applied Biosystems) system in accordance with MIQE guidelines (26). Standard curves were generated using five point serial dilutions of genomic DNA (5-fold) from WT S. agalactiae 874391 (27). Expression ratios were calculated using C T values and primer efficiencies as described elsewhere (28) using dnaN , encoding DNA polymerase III β-subunit as housekeeper.…”
Section: Methodsmentioning
confidence: 99%
“…We ran paired-end 2 × 75–bp sequencing runs to align the cDNA sequences to the reference genome. For data preprocessing and bioinformatics, STAR (version 2.7.3a) was used to align the raw RNA sequencing fastq reads to the WT S. agalactiae 874391 reference genome (27). HTSeq-count, version 0.11.1, was used to estimate transcript abundances (29).…”
Section: Methodsmentioning
confidence: 99%
“…Primers (Supplementary Table S1) were designed using Primer3 Plus (30, 31) to quantify transcripts using Universal SYBR Green Supermix (Bio-Rad) using a Quantstudio 6 Flex (Applied Biosystems) system in accordance with MIQE guidelines (32). Standard curves were generated using five-point serial dilutions of genomic DNA (5-fold) from WT GBS 874391 (33). Expression ratios were calculated using C T values and primer efficiencies as described elsewhere (34) using dnaN , encoding DNA polymerase III β-subunit as housekeeper.…”
Section: Methodsmentioning
confidence: 99%
“…We ran paired-end 2 × 75–bp sequencing runs to align the cDNA sequences to the reference genome. For data preprocessing and bioinformatics, STAR (version 2.7.3a) was used to align the raw RNA sequencing fastq reads to the WT GBS 874391 reference genome (33). HTSeq-count, version 0.11.1, was used to estimate transcript abundances (36).…”
Section: Methodsmentioning
confidence: 99%
“…The bacterial strains and plasmids used in this study are listed in Table 1. The whole-genome-sequenced hypervirulent sequence type 17 (ST-17) type strain GBS 874391 (72) or its isogenic CovR-deficient derivative strain (25) was used. Plasmid pJRS9567 was kindly provided by Timothy Barnett and June Scott, Emory University.…”
Section: Methodsmentioning
confidence: 99%