Complete Genome Sequence of Porcine Parvovirus 2 Recovered from Swine Sera

The complete chloroplast genome sequence of Senna tora was characterized from Illumina pair-end sequencing. The chloroplast genome of S. tora was 161,050 bp in length, containing a large single-copy region (LSC) of 90,411 bp, a small single-copy region (SSC) of 18,537 bp, and two inverted repeat (IR) regions of 26,050 bp. The overall GC content is 36.20%, while the correponding values of the LSC, SSC, and IR regions are 64.5%, 69.4%, and 60.2%, respectively. The genome contains 129 complete genes, including 8 rRNAs, 37 tRNAs and 84 protein coding genes. The Neighbour-joining phylogenetic analysis showed that S. tora and S. bicapsularis clustered together as sisters to other Senna species.

Section: Introductionmentioning

confidence: 99%

The complete chloroplast genome sequence of Senna tora and phylogenetic analysis

Chen

2020

“…We used H. rahmnoides (GenBank: NC_035548) as a reference genome. We annotated the chloroplast genome with the software DOGMA (Wyman et al 2004), and then corrected the results using Geneious 8.0.2 (Campos et al 2016) and Sequin 15.50 (http://www.ncbi.nlm. nih.gov/Sequin/).…”

Section: Introductionmentioning

confidence: 99%

The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis

Zhang

Duan

et al. 2020

The complete chloroplast genome sequence of Hippophae rahmnoides subsp. sinensis was characterized from Illumina pair-end sequencing. The chloroplast genome of H. rahmnoides subsp. sinensis was 156,355 bp in length, containing a large single-copy region (LSC) of 84,002 bp, a small single-copy region (SSC) of 19,055 bp, and two inverted repeat (IR) regions of 26,649 bp. The overall GC content is 36.6%, while the corresponding values of the LSC, SSC, and IR regions are 64.5%, 69.2%, and 60.1%, respectively. The genome contains 131 complete genes, including 88 protein-coding genes, 38 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that H. rahmnoides subsp. sinensis and H. rahmnoides clustered together as sisters to other H. rahmnoides species.

“…We used P. tremuloides (GenBank: MN561844) as a reference genome. We annotated the chloroplast genome with the software DOGMA (Wyman et al 2004), and then corrected the results using Geneious 8.0.2 (Campos et al 2016) and Sequin 15.50 (http://www.ncbi.nlm. nih.gov/Sequin/).…”

Section: Introductionmentioning

confidence: 99%

The complete chloroplast genome sequence of Populus adenopoda (Salicaceae)

Hou

2020

The complete chloroplast genome sequence of Populus adenopoda was characterized from Illumina pair-end sequencing. The chloroplast genome of P. adenopoda was 155,533 bp in length, containing a large single-copy region (LSC) of 84,818 bp, a small single-copy region (SSC) of 16,845 bp, and two inverted repeat (IR) regions of 26,935 bp. The overall GC content is 30.7%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.5%, and 42.3%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species) and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that P. adenopoda and Populus alba clustered together as sisters to other Populus species.