Alphaviral infections are foremost in causing debilitating clinical outcomes in humans characterized by rheumatic arthritis like conditions. Though the presence of virus in joints and associated inflammation has been implicated as one of the reasons for the acute and chronic polyarthritis post alphaviral infections, the basis for rheumatic like outcomes is not clear. through an in silico analysis, we have investigated the possibility of an autoimmune process mediated through molecular mimicry in alphaviral infection induced pathogenicity. interestingly, sequence alignment of the structural polyproteins belonging to arthritogenic alphaviruses revealed conserved regions which share homology with human proteins implicated in rheumatoid arthritis (RA). these conserved regions were predicted to exhibit binding to HLA class ii alleles, showcasing their potential to incite t cell help. Molecular docking of the viral peptide and the corresponding homologous region in the human protein onto HLA-DRB1 revealed strong similarities in their binding patterns. Linear and conformational B cell epitope prediction analyses showed that these potential mimics have high propensity to elicit an efficient B cell response. We thus propose that the origin of polyarthritis post-arthritogenic alphaviral infections may also be mediated through a hitherto unknown autoimmune response due to the presence of crossreactive epitopes between viral and human proteins. Alphaviruses belonging to the group IV togoviridae family are positive sense, single stranded RNA viruses. These enveloped viruses are classified as old world and new world. While new world viruses are encephalitogenic, members of the old world are known to induce polyarthritis 1. The members of the old world viruses include Chikungunya Virus (CHIKV), Ross River Virus (RRV), Mayaro Virus (MAYV), O'nyong nyong virus (ONV), Semiliki Forest Virus (SFV) and the Barmah Forest Virus (BFV). These mosquito transmitted viruses are globally distributed and are known to cause acute febrile illnesses, malaise, maculopapular rashes, myalgia, and severe arthralgia in humans 2-5. Most often the infection remains endemic, but some viral strains are also associated with large epidemics such as the Chikungunya virus (CHIKV) outbreak which was spread across 40 countries with 1.4-6.5 million reported cases globally 6. Several studies also report a simultaneous increase in alpha virus associated arthritis lasting even after decrease in viral load 7. While there is a resurgence of alphavirus associated arthritis cases, the knowledge about the molecular level events during infections involved in these conditions and about the direct cause and effect of the phenomenon is very sparse. For instance, macrophages, natural killer cells, CD4+ and CD8+ T lymphocytes have been shown as the main components of the inflammatory cellular infiltrate in animal models of CHIKV and RRV infections 8-10. Production of a broad range of pro-inflammatory cytokines (IL-6, TNF, IFN-α/β, and IFNγ) and chemokines (MCP-1 and RANTES) ...