Complete Genome Sequence of Bacillus amyloliquefaciens subsp.
            <i>plantarum</i>
            CC178, a Phyllosphere Bacterium Antagonistic to Plant Pathogenic Fungi

Kim, Byung-Yong; Lee, Sang-Yeob; Ahn, Jae-Hyung; Song, Jaekyeong; Kim, Wan-Gyu; Weon, Hang-Yeon

doi:10.1128/genomea.01368-14

Cited by 14 publications

(10 citation statements)

References 8 publications

(8 reference statements)

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“… * Indicates that the genes noted have been studied in this species . A superscript beside the species refers to the recent genome sequence data as indicated below a B. amyloliquefaciens (Kim et al, 2015 ) , b Agrobacterium radiobacter (Zhang et al, 2014 ) , c P. polymyxa (Xie et al, 2014 ) , d P. fluorescens (Martínez-García et al, 2015 ) , e B. subtilis (Barbe et al, 2009 ; Belda et al, 2013 ) . …”

Section: Biosynthetic Genes Encode Diverse Chemical Classes Of Anti-mmentioning

confidence: 99%

Biodiversity of genes encoding anti-microbial traits within plant associated microbes

Mousa

Raizada

2015

Front. Plant Sci.

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The plant is an attractive versatile home for diverse associated microbes. A subset of these microbes produces a diversity of anti-microbial natural products including polyketides, non-ribosomal peptides, terpenoids, heterocylic nitrogenous compounds, volatile compounds, bacteriocins, and lytic enzymes. In recent years, detailed molecular analysis has led to a better understanding of the underlying genetic mechanisms. New genomic and bioinformatic tools have permitted comparisons of orthologous genes between species, leading to predictions of the associated evolutionary mechanisms responsible for diversification at the genetic and corresponding biochemical levels. The purpose of this review is to describe the biodiversity of biosynthetic genes of plant-associated bacteria and fungi that encode selected examples of antimicrobial natural products. For each compound, the target pathogen and biochemical mode of action are described, in order to draw attention to the complexity of these phenomena. We review recent information of the underlying molecular diversity and draw lessons through comparative genomic analysis of the orthologous coding sequences (CDS). We conclude by discussing emerging themes and gaps, discuss the metabolic pathways in the context of the phylogeny and ecology of their microbial hosts, and discuss potential evolutionary mechanisms that led to the diversification of biosynthetic gene clusters.

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Section: Biosynthetic Genes Encode Diverse Chemical Classes Of Anti-mmentioning

confidence: 99%

Biodiversity of genes encoding anti-microbial traits within plant associated microbes

Mousa

Raizada

2015

Front. Plant Sci.

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“…DSMZ 13134. However, also several plant pathogens belong to this genus, such as the model phyllosphere pathogen Pseudomonas syringae Chen et al, 2007;Ongena and Jacques, 2008;Dunlap et al, 2013;Kim et al, 2015 X fenF, mycABC Lipopeptide, iturin Interferes with lipid layers Bacillus spp. Chen et al, 2007;Ongena and Jacques, 2008;Dunlap et al, 2013;Kim et al, 2015 X ppsABCDE Lipopeptide, fengycin Interferes with lipid layers Bacillus spp.…”

Section: Direct Interactions Antibiotic Metabolites and Binary Inhibimentioning

confidence: 99%

“…However, also several plant pathogens belong to this genus, such as the model phyllosphere pathogen Pseudomonas syringae Chen et al, 2007;Ongena and Jacques, 2008;Dunlap et al, 2013;Kim et al, 2015 X fenF, mycABC Lipopeptide, iturin Interferes with lipid layers Bacillus spp. Chen et al, 2007;Ongena and Jacques, 2008;Dunlap et al, 2013;Kim et al, 2015 X ppsABCDE Lipopeptide, fengycin Interferes with lipid layers Bacillus spp. Chen et al, 2007;Ongena and Jacques, 2008;Dunlap et al, 2013;Kim et al, The table includes (i) information on in vitro assays to test for the presence of these mechanisms, (ii) known genes involved in these mechanisms (in silico screening), (iii) the compound and (iv) the mechanism resulting in antipathogenic activity, (v) microbes in which the mechanism has been identified, (vi) references and the last two columns indicate whether the mechanism is (vii) a biocontrol factor (BC) and/or (viii) an adaptation factor (A).…”

Section: Direct Interactions Antibiotic Metabolites and Binary Inhibimentioning

confidence: 99%

Modes of Action of Microbial Biocontrol in the Phyllosphere

et al. 2020

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A fast-growing field of research focuses on microbial biocontrol in the phyllosphere. Phyllosphere microorganisms possess a wide range of adaptation and biocontrol factors, which allow them to adapt to the phyllosphere environment and inhibit the growth of microbial pathogens, thus sustaining plant health. These biocontrol factors can be categorized in direct, microbe-microbe, and indirect, host-microbe, interactions. This review gives an overview of the modes of action of microbial adaptation and biocontrol in the phyllosphere, the genetic basis of the mechanisms, and examples of experiments that can detect these mechanisms in laboratory and field experiments. Detailed insights in such mechanisms are key for the rational design of novel microbial biocontrol strategies and increase crop protection and production. Such novel biocontrol strategies are much needed, as ensuring sufficient and consistent food production for a growing world population, while protecting our environment, is one of the biggest challenges of our time.

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“…AP183 is predicted to encode five trans -acyltransferase (AT) polyketide synthases (PKS), three nonribosomal peptide synthetases (NRPS), two hybrid PKS-NRPS, one hybrid trans -AT PKS, one type I PKS, one type II PKS, one type III PKS, and two terpene and two bacteriocin biosynthesis gene clusters. The AP183 genome is also predicted to contain a cluster with ORFs with homology to genes in the bacilysin biosynthetic cluster (8). In addition, an NRPS biosynthetic gene cluster was predicted in the AP183 genome with no known homology to that of other Bacillus species but with homologs within the genome of Cyanothece sp.…”

Section: Genome Announcementmentioning

confidence: 99%

Draft Genome Sequence of Bacillus amyloliquefaciens AP183 with Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus

2015

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Complete Genome Sequence of Bacillus amyloliquefaciens subsp. plantarum CC178, a Phyllosphere Bacterium Antagonistic to Plant Pathogenic Fungi

Cited by 14 publications

References 8 publications

Biodiversity of genes encoding anti-microbial traits within plant associated microbes

Biodiversity of genes encoding anti-microbial traits within plant associated microbes

Modes of Action of Microbial Biocontrol in the Phyllosphere

Draft Genome Sequence of Bacillus amyloliquefaciens AP183 with Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus

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