2019
DOI: 10.1101/787556
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Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

Abstract: AbstractMangroves are main components of an ecosystem which connect land and ocean and is of significant ecological importance. They are found around the world and taxonomically distributed in 17 families. Until now there has been no evolutionary phylogenetic analyses on mangroves based on complete plastome sequences. In order to infer the relationship between mangroves and terrestrial plants at the molecular level, we generated chloroplast genomes of 14 mangrove species from e… Show more

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Cited by 3 publications
(12 citation statements)
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References 49 publications
(53 reference statements)
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“…Based on a reference genome-based strategy, the Illumina paired-end reads and B. sexangula (the accession in the project-ID in CNSA ( ) ( Shi et al, 2020 )) were used for assembling the chloroplast genomes of the five Bruguiera species using GetOrganelle ( Jin et al, 2020 ).…”
Section: Methodsmentioning
confidence: 99%
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“…Based on a reference genome-based strategy, the Illumina paired-end reads and B. sexangula (the accession in the project-ID in CNSA ( ) ( Shi et al, 2020 )) were used for assembling the chloroplast genomes of the five Bruguiera species using GetOrganelle ( Jin et al, 2020 ).…”
Section: Methodsmentioning
confidence: 99%
“…The comparison of whole chloroplast genomes among the Bruguiera species and two close non-mangrove species, Pellacalyx yunnanensis ( ) of Rhizophoraceae and Erythroxylum novogranatense ( ) of Erythroxylaceae, were analyzed to investigate sequence divergence using mVISTA with the Shuffe-LAGAN mode ( Frazer et al, 2004 ). The previously reported chloroplast genome of B. sexangula was used as a reference for comparison ( Shi et al, 2020 ). Furthermore, the junctions and borders of the IR regions were illustrated using IRscope ( Amiryousefi, Hyvönen & Poczai, 2018 ).…”
Section: Methodsmentioning
confidence: 99%
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