Complete chloroplast genome of Calligonum mongolicum Turcz. and comparative analysis with other Calligonum species

Duan, Huirong; Zhang, Qian; Tian, Fei; Hu, Yu; Wang, Chunmei; Lü, Yuan; Yuan, Huijun; Yang, Hongshan; Cui, Guangxin

doi:10.1016/j.jarmap.2022.100370

Cited by 3 publications

(2 citation statements)

References 65 publications

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“…The cp genome of L. lamottei (122.8 kb) of the Fabaceae family has a similar size to that of the close wild relative L. ervoides 20 , the cultivated form L. culinaris , and other Fabaceae species such as O. arctobia 38 . The configuration of cp genomes in the species of this family is similar, with sizes ranging from 107 to 218 kb 39 .…”

Section: Discussionmentioning

confidence: 98%

Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris

Kurt,

Kaymaz,

Ateş

et al. 2023

Sci Rep

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Lens lamottei is a member of the Fabaceae family and the second gene pool of the genus Lens. The environmental factors that drove the divergence among wild and cultivated species have been studied extensively. Recent research has focused on genomic signatures associated with various phenotypes with the acceleration of next-generation techniques in molecular profiling. Therefore, in this study, we provide the complete sequence of the chloroplast genome sequence in the wild Lens species L. lamottei with a deep coverage of 713 × next-generation sequencing (NGS) data for the first time. Compared to the cultivated species, Lens culinaris, we identified synonymous, and nonsynonymous changes in the protein-coding regions of the genes ndhB, ndhF, ndhH, petA, rpoA, rpoC2, rps3, and ycf2 in L. lamottei. Phylogenetic analysis of chloroplast genomes of various plants under Leguminosae revealed that L. lamottei and L. culinaris are closest to one another than to other species. The complete chloroplast genome of L. lamottei also allowed us to reanalyze previously published transcriptomic data, which showed high levels of gene expression for ATP-synthase, rubisco, and photosystem genes. Overall, this study provides a deeper insight into the diversity of Lens species and the agricultural importance of these plants through their chloroplast genomes.

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Section: Discussionmentioning

confidence: 98%

Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris

Kurt,

Kaymaz,

Ateş

et al. 2023

Sci Rep

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show abstract

“…In recent years, with the rapid development of plant genomics and transcriptomics, more plant genetic resources have been utilized and protected [24,25].…”

Section: Discussionmentioning

confidence: 99%

Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Chen,

Li,

Wang

et al. 2024

PLoS ONE

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The MADS-box gene family controls plant flowering and floral organ development; therefore, it is particularly important in ornamental plants. To investigate the genes associated with the MADS-box family in Clematis courtoisii, we performed full-length transcriptome sequencing on C. courtoisii using the PacBio Sequel third-generation sequencing platform, as no reference genome data was available. A total of 12.38 Gb of data, containing 9,476,585 subreads and 50,439 Unigenes were obtained. According to functional annotation, a total of 37,923 Unigenes (75.18% of the total) were assigned with functional annotations, and 50 Unigenes were identified as MADS-box related genes. Subsequently, we employed hmmerscan to perform protein sequence similarity search for the translated Unigene sequences and successfully identified 19 Unigenes associated with the MADS-box gene family, including MIKC*(1) and MIKCC (18) genes. Furthermore, within the MIKCC group, six subclasses can be further distinguished.

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Applying DNA barcoding to identify the cultivated provenance of Fritillaria taipaiensis P. Y. Li and its related species

Liang,

Zhang,

Wang

et al. 2024

Journal of Applied Research on Medicinal and Aromatic Plants

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Complete chloroplast genome of Calligonum mongolicum Turcz. and comparative analysis with other Calligonum species

Cited by 3 publications

References 65 publications

Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris

Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris

Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Applying DNA barcoding to identify the cultivated provenance of Fritillaria taipaiensis P. Y. Li and its related species

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