2015
DOI: 10.1007/s10722-015-0230-x
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Complete chloroplast DNA sequences of Zanduri wheat (Triticum spp.)

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Cited by 27 publications
(25 citation statements)
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“…Triticum lineage, recovery of major subclades in the lineage is congruent with other studies (Petersen et al, 2006;Gornicki et al, 2014;Bernhardt et al, 2017). The Aegilops speltoides + Triticum timopheevii sublineage has been found in other studies (Golovnina et al, 2007;Gornicki et al, 2014;Gogniashvili et al, 2015) plastome (Gornicki et al, 2014) and nuclear (Petersen et al, 2006;Nasernakhaei et al, 2015) trees, but none of those studies sampled the Georgian endemic Triticum macha. Golovnina et al Aegilops clade is congruent with other plastid trees with similar sampling (Petersen et al, 2006; PeerJ reviewing PDF | (2017:08:19682:2:0:NEW 4 Jan 2018)…”
Section: Triticeaesupporting
confidence: 86%
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“…Triticum lineage, recovery of major subclades in the lineage is congruent with other studies (Petersen et al, 2006;Gornicki et al, 2014;Bernhardt et al, 2017). The Aegilops speltoides + Triticum timopheevii sublineage has been found in other studies (Golovnina et al, 2007;Gornicki et al, 2014;Gogniashvili et al, 2015) plastome (Gornicki et al, 2014) and nuclear (Petersen et al, 2006;Nasernakhaei et al, 2015) trees, but none of those studies sampled the Georgian endemic Triticum macha. Golovnina et al Aegilops clade is congruent with other plastid trees with similar sampling (Petersen et al, 2006; PeerJ reviewing PDF | (2017:08:19682:2:0:NEW 4 Jan 2018)…”
Section: Triticeaesupporting
confidence: 86%
“…Our sampling includes plastomes from additional species of Aegilops and Triticum (Gornicki et al, 2014;Gogniashvili et al, 2015) compared to an earlier study (Saarela et al, 2015 (Petersen et al, 2006). Despite our incomplete genus-level sampling of the Aegilops and…”
Section: Triticeaementioning
confidence: 99%
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“…Next, we performed BLASTs between trimmed reads and reference sequences ( Artemisia frigida ) to extract cp-like reads [ 55 ]. Finally, the cp-like reads were used for sequence assembly with SOAPdenovo [ 56 ]. Sequence extension was executed using SSPACE [ 57 ], and gaps were filled using GapCloser [ 58 ].…”
Section: Methodsmentioning
confidence: 99%
“…Chloroplast-like reads were predicted from clean-reads by BLAST [32] searches using the sequences of the reference Rosa chinensis. Then, the cp reads was used to assemble sequences by SOAPdenovo-2.04 [33]. Finally, sequences were extended and gaps filled with SSPACE-3.0 and Gap-Closer-1.12 [34,35].…”
Section: Dna Sequencing Assembly and Validation Of The Cp Genomementioning
confidence: 99%