Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference

Abstract

Probabilistic programming languages (PPLs) allow for natural encoding of arbitrary inference problems, and PPL implementations can provide automatic general-purpose inference for these problems. However, constructing inference implementations that are efficient enough is challenging for many real-world problems. Often, this is due to PPLs not fully exploiting available parallelization and optimization opportunities. For example, handling of probabilistic checkpoints in PPLs through the use of continuation-passing style transformations or nonpreemptive multitasking-as is done in many popular PPLs-often disallows compilation to low-level languages required for high-performance platforms such as graphics processing units (GPUs). As a solution to this checkpoint problem, we introduce the concept of PPL control-flow graphs (PCFGs), providing a simple and efficient approach that can be used for handling checkpoints in such languages. We use this approach to implement RootPPL: a low-level PPL built on CUDA and C++ with OpenMP, providing highly efficient and massively parallel SMC inference. We also introduce a general method of compiling universal highlevel PPLs to PCFGs, and illustrate its application when compiling Miking CorePPL-a high-level universal PPL-to RootPPL. This is the first time a universal PPL has been compiled to GPUs with SMC inference. Both RootPPL and the CorePPL compiler are evaluated through a set of real-world experiments in the domains of phylogenetics and epidemiology, demonstrating up to 6× speedups over state-of-the-art PPLs implementing SMC inference.

Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference

“…An artifact accompanying this paper supports the evaluation [26]. An extended version of this article is also available [27]. A † symbol in the text indicates more information is available in the extended version.…”