The influcnce of chemical modification of arginine residues (using phenylglyoxal) in ferredoxin -NADP+ reductase (FNR), and of carboxyl groups (using glycine ethyl ester) in flavodoxin (Fld), on the kinetics of electron transfer between PNR and Fld, and between ferredoxin (Fd) and FNR, was examined using laser flash photolysis methods. All proteins were obtained from the cyanobacterium Anabaena PCC 71 19. Reduction by laser-generated 5-deazariboflavin semiquinone of the FAD moiety of phenylglyoxal-modified FNR occurred with a second-order rate constant 2.5-fold smaller than that obtained for reduction of native FNR, indicating either a small degree of steric hindrance of the cofactor, or a decrease in its redox potential, upon chemical modification. In contrast, no changes were found in the kinetics of reduction of the FMN cofactor of Fld modified by glycine ethyl ester as compared with the native protein. The observed rate constants for reoxidation of Fdred (reduced Fd) by FNR,, (oxidized FNR) were dramatically decreased (z 100-fold) when phenylglyoxal-modified FNR was used, In contrast to the reaction involving the native proteins, no ionic strength effects on kohs values were found. These results, and those obtained upon varying the protein concentration, indicate that the rate constant for complex formation and the attractive electrostatic interaction between the two proteins were greatly diminished by chemical modification of arginine residues of FNR. When phenylglyoxal-modified FNR,, (FNR semiquinone) was used to reduce Fld,, (oxidized Fld), similar inhibitory effects were observed. In this case, the limiting first-order rate constant for Fld,, (Fld semiquinone) formation via intracomplex electron transfer from FNR,, was approximately 12-fold smaller than that obtained for the native FNR (600 s-vs 7000 s-'). Again, ionic strength effects were diminished. The glycine-ethyl-ester-modified Fld yielded a limiting first-order rate constant for intracomplex electron transfer from FNR,, to Fld,, which was approximately 7-fold smaller (1000 s-') than that obtained with native Fld, and ionic strength effects were again diminished. These results indicate that complex formation can still occur between modified FNR and native Fld, and between native FNR and modified Fld, but that the geometry of these complexes is altered so as to decrease the effectiveness of interprotein electron transfer. The results are discussed in terms of the specific structural features of the proteins involved.Ferredoxin -NADP' reductase (FNR) is a flavoenzyme that plays a key role in the metabolism of photosynthetic organisms by catalyzing the photoreduction of NADP+ using ferredoxin (Fd) or flavodoxin (Fld) as electron donors. It has also been implicated in the reverse electron transfer from NADPH to nitrogenase via Fd or Fld that occurs in nitrogenCorrespondence to G. Tollin, Department of Biochcmistry, UniFax: $1 602 621 9288. Abbreviations. FNR, FNR,, and FNR,,, ferredoxin -NADP' reductase and its oxidized and one-electron-reduced seiniq...