The degree of chromosomal losses and the presence of microsatellite instability (MSI) in gastric carcinomas have been categorized into low-risk (low-level loss and MSI) and high-risk (baseline-and high-level losses) genotypes. With the aim of making a preoperative diagnosis, this study confirmed the stem line genotype that is common over an entire tumor as well as in a single biopsy specimen. Biopsy specimens were obtained from 91 gastric carcinoma patients and examined for their microsatellite genotypes using a panel of 41 microsatellite markers on 8 cancer-associated chromosomes. The genotype of the biopsy specimens was compared with that of a surgical specimen, which had been multifocally examined for its intratumoral heterogeneity. Of the 91 pairs of biopsy and surgical specimens, 87 (96%) containing either the same (60 cases) or a similar (17 cases) number of chromosomal losses were categorized into the same microsatellite genotype, and the remaining 4 pairs (4%) were classified into a different genotype. The surgical specimens showed that an extraserosal invasion and lymph node metastasis are frequently associated with either a high-level (4 or more) of chromosomal losses irrespective of the tumor size (73% and 85%) or the large carcinomas > 5 cm in diameter irrespective of the tumor genotype (76% and 83%). The status of the extraserosal invasion and lymph node metastasis (0.691 and 0.802 receiver operating characteristic areas, respectively) predicted by the biopsy genotype and the tumor size corresponded closely to the surgical pathology results. Therefore, the extent of chromosomal losses and the presence of an MSI determined on a biopsy specimen will provide valuable information for making a preoperative genetic diagnosis of a gastric carcinoma.Key words: preoperative genetic diagnosis; gastric carcinoma; chromosomal loss A gastric carcinoma is one of the most common malignancies and leading causes of death. 1 The complete removal (R0) of the residual tumor cells is the only cure, which can be achieved only by a surgical resection of the stomach and locoregional lymph nodes. [2][3][4][5] Clinicians frequently experience several variants of the tumor such as the early nodal involvement of small-sized tumors and the recurrence of early-stage disease. 6,7 This suggests that the metastatic potential varies between cases. In addition, the presence of microscopic tumor cells spreading to the surrounding tissues and distant organs in common cases of gastric carcinoma cannot be predicted from a conventional image and a naked-eye diagnosis. 8 -10 It is believed that genetic instability in a malignancy causes the complex genetic alterations. 11,12 In gastrointestinal carcinomas, a microsatellite instability (MSI) and a loss of heterozygosity (LOH) are frequently observed as a result of the hypermutability of simple repeated nucleotide sequences and unilateral chromosomal losses, respectively. 13,14 The presence of an MSI and the extent (baseline, low, and high levels) of chromosomal losses have been reported t...