Hydraulic conductivity of hydrophobic porous media is greater than that of hydrophilic porous media under the same saturation condition. One of the reasons for this is that the size of the pores filled by water in hydrophobic porous media is greater than that in hydrophilic media under unsaturated conditions. The validity of this phenomenon was ascertained through numerical experiments using a pore-network model. However, the pore-network model with circular tubes could not account for the phenomena sufficiently. Then, noncircular tubes are employed to take air-water interfaces formed at gaps between grains into account. In one case of hydrophobic grains, water cannot occupy corners and flows in the center of capillary tubes. In the other case of hydrophilic grains, water invades the corners first and flows through the corner filaments until water enters the tube completely. In this study, equilateral triangular and cuspate cross-sections are used, and the relation between the flow resistance of the tube, which is separated into shape and scale factors, and capillary pressure is investigated. The computed results show that the flow resistance of center flows could become smaller than that of full flow and that it leads to higher hydraulic conductivity of hydrophobic porous media.