The universal sample processing (USP) multipurpose methodology was developed for the diagnosis of tuberculosis (TB) and other mycobacterial diseases by using smear microscopy, culture, and PCR (S. Chakravorty and J. S. Tyagi, J. Clin. Microbiol. 43:2697-2702, 2005). Its performance was evaluated in a blinded study of 571 sputa and compared with that of the direct and N-acetyl L-cysteine (NALC)-NaOH methods of smear microscopy and culture. With culture used as the gold standard, USP smear microscopy demonstrated a sensitivity and specificity of 98.2% and 91.4%, respectively, compared to 68.6% and 92.6%, respectively, for the direct method. For a subset of 325 specimens, the USP method recorded a 97.1% sensitivity and 83.2% specificity compared to the NALC-NaOH method, which had a sensitivity and specificity of 80.0% and 89.7%, respectively, with culture used as the gold standard. Thus, the USP method exhibited a highly significant enhancement in sensitivity (P < 0.0001) compared to the direct and NALC-NaOH methods of smear microscopy. The USP culture sensitivity was 50.1% and was not significantly different from that of conventional methods (53.6%). The sensitivity and specificity of IS6110 PCR were 99.1% and 71.2%, respectively, with culture used as the gold standard, and increased to 99.7% and 78.8%, respectively, when compared with USP smear microscopy. Thus, the USP methodology was highly efficacious in diagnosing TB by smear microscopy, culture, and PCR in a clinical setting.The identification of infectious cases is a crucial first step for tuberculosis (TB) control programs worldwide. It relies exclusively on the detection of acid-fast bacilli (AFB) in sputum by smear microscopy, which continues to be the mainstay of diagnostic laboratories since its introduction in the late nineteenth century. It is estimated that Ͻ20% of approximately 8 million predicted annual cases of TB worldwide are identified as smear positive (15). The targets of a 70% case detection rate and 85% treatment success (22) are not likely to be achieved with the existing methods of smear microscopy. Therefore, there is an urgent and definite need to improve the sensitivity of smear microscopy. In different laboratory settings, the sensitivity of the direct smear method has ranged from 40 to 85% (10, 14, 21; this study), and this method often requires an examination of two or three specimens from the same patient. The inclusion of a concentration step enhanced the sensitivity of the direct smear method, from 54 to 57% to 63 to 80% (5, 9). The N-acetyl L-cysteine (NALC)-NaOH concentration method has shown an improved sensitivity of ϳ66 to 83% (8, 16). However, a conflicting report suggests that the overall diagnostic sensitivity of smear microscopy did not increase with sputum liquefaction and concentration (21). New methods of smear microscopy, such as those using household bleach (NaOCl) (10), carboxypropylbetaine (20), chitin (8), and phenol ammonium sulfate (17), have shown sensitivities ranging from 70 to 80%. We have recently describ...