Abstract:Digital pathology has shown great importance for diagnostic purposes in the digital age by integrating basic image features into multi-modality information. We quantify the degree of correlation between the multiple texture features from H&E images and polarization parameter sets derived from Mueller matrix images of the same sample to provide more microstructural information for assisting diagnosis. The experimental result shows the correlations between texture feature and polarization parameter via Pears… Show more
“…Additionally, we also choose the gray scale co-occurrence matrix (GLCM) method ( Haralick et al, 1973 ), which has been demonstrated as a powerful tool for the Mueller matrix imaging results analysis in recent studies ( Shen et al, 2020 ; Liu et al, 2021 ; Zhai et al, 2022 ), for the MMPD parameters comparisons. Here, the GLCM parameters Contrast, Correlation, Energy, and Homogeneity are adopted as shown in Eqs 8 – 12 .…”
Section: Methodsmentioning
confidence: 99%
“…When applied to clinical detection, the imaging speed should be considered in addition to the impact of imaging resolution. Some recent researches have shown that the polarization imaging method can better preserve the microstructural information of the sample when imaging resolution decreased compared to unpolarized optical imaging methods ( Shen et al, 2020 ; Liu et al, 2021 ; Chen et al, 2022 ; Yao et al, 2022 ). It indicates that adopting the polarization imaging method can well balance the requirements of imaging resolution and FOV, to acquire the micro- and even nanostructural ( Dong et al, 2020 ; Chen et al, 2021a ; Wang et al, 2021 ; Fang et al, 2022 ) properties of the scattering medium quickly using a relatively low NA objective.…”
The Mueller matrix contains abundant micro- and even nanostructural information of media. Especially, it can be used as a powerful tool to characterize anisotropic structures quantitatively, such as the particle size, density, and orientation information of fibers in the sample. Compared with unpolarized microscopic imaging techniques, Mueller matrix microscopy can also obtain some essential structural information about the sample from the derived parameters images at low resolution. Here, to analyze the comprehensive effects of imaging resolution on polarization properties obtained from the Mueller matrix, we, first, measure the microscopic Mueller matrices of unstained rat dorsal skin tissue slices rich in collagen fibers using a series of magnifications or numerical aperture (NA) values of objectives. Then, the first-order moments and image texture parameters are quantified and analyzed in conjunction with the polarization parameter images. The results show that the Mueller matrix polar decomposition parameters diattenuation D, linear retardance δ, and depolarization Δ images obtained using low NA objective retain most of the structural information of the sample and can provide fast imaging speed. In addition, the scattering phase function analysis and Monte Carlo simulation based on the cylindrical scatterers reveal that the diattenuation parameter D images with different imaging resolutions are expected to be used to distinguish among the fibrous scatterers in the medium with different particle sizes. This study provides a criterion to decide which structural information can be accurately and rapidly obtained using a transmission Mueller matrix microscope with low NA objectives to assist pathological diagnosis and other applications.
“…Additionally, we also choose the gray scale co-occurrence matrix (GLCM) method ( Haralick et al, 1973 ), which has been demonstrated as a powerful tool for the Mueller matrix imaging results analysis in recent studies ( Shen et al, 2020 ; Liu et al, 2021 ; Zhai et al, 2022 ), for the MMPD parameters comparisons. Here, the GLCM parameters Contrast, Correlation, Energy, and Homogeneity are adopted as shown in Eqs 8 – 12 .…”
Section: Methodsmentioning
confidence: 99%
“…When applied to clinical detection, the imaging speed should be considered in addition to the impact of imaging resolution. Some recent researches have shown that the polarization imaging method can better preserve the microstructural information of the sample when imaging resolution decreased compared to unpolarized optical imaging methods ( Shen et al, 2020 ; Liu et al, 2021 ; Chen et al, 2022 ; Yao et al, 2022 ). It indicates that adopting the polarization imaging method can well balance the requirements of imaging resolution and FOV, to acquire the micro- and even nanostructural ( Dong et al, 2020 ; Chen et al, 2021a ; Wang et al, 2021 ; Fang et al, 2022 ) properties of the scattering medium quickly using a relatively low NA objective.…”
The Mueller matrix contains abundant micro- and even nanostructural information of media. Especially, it can be used as a powerful tool to characterize anisotropic structures quantitatively, such as the particle size, density, and orientation information of fibers in the sample. Compared with unpolarized microscopic imaging techniques, Mueller matrix microscopy can also obtain some essential structural information about the sample from the derived parameters images at low resolution. Here, to analyze the comprehensive effects of imaging resolution on polarization properties obtained from the Mueller matrix, we, first, measure the microscopic Mueller matrices of unstained rat dorsal skin tissue slices rich in collagen fibers using a series of magnifications or numerical aperture (NA) values of objectives. Then, the first-order moments and image texture parameters are quantified and analyzed in conjunction with the polarization parameter images. The results show that the Mueller matrix polar decomposition parameters diattenuation D, linear retardance δ, and depolarization Δ images obtained using low NA objective retain most of the structural information of the sample and can provide fast imaging speed. In addition, the scattering phase function analysis and Monte Carlo simulation based on the cylindrical scatterers reveal that the diattenuation parameter D images with different imaging resolutions are expected to be used to distinguish among the fibrous scatterers in the medium with different particle sizes. This study provides a criterion to decide which structural information can be accurately and rapidly obtained using a transmission Mueller matrix microscope with low NA objectives to assist pathological diagnosis and other applications.
“…However, these properties may not directly highlight the underlying structure and arrangement of collagen within the tissue sample, and thus much work has gone into interpreting and correlating the observed polarimetric parameter changes with their core biological or biophysical meaning. Yet with the advancement of artificial intelligence (AI) in recent years, an alternative to this detailed understanding/interpretation has emerged whereby researchers have used various machine and deep learning techniques to directly link up the rich biological information from the polarization properties with clinical diagnosis and prognosis 15 , 27 – 33 .…”
Using a novel variant of polarized light microscopy for high-contrast imaging and quantification of unstained histology slides, the current study assesses the prognostic potential of peri-tumoral collagenous stroma architecture in 32 human stage III colorectal cancer (CRC) patient samples. We analyze three distinct polarimetrically-derived images and their associated texture features, explore different unsupervised clustering algorithm models to group the data, and compare the resultant groupings with patient survival. The results demonstrate an appreciable total accuracy of ~ 78% with significant separation (p < 0.05) across all approaches for the binary classification of 5-year patient survival outcomes. Surviving patients preferentially belonged to Cluster 1 irrespective of model approach, suggesting similar stromal microstructural characteristics in this sub-population. The results suggest that polarimetrically-derived stromal biomarkers may possess prognostic value that could improve clinical management/treatment stratification in CRC patients.
“…Polarization measurement is widely used in the field of biomedicine due to its sensitivity to the microstructural changes of biological tissues and its noninvasive features. At present, polarization images have shown potential in the diagnosis of breast cancer [1,2], cervical cancer [3], chronic liver disease [4] and other diseases. Mueller matrix system is a typical polarization measurement method as the information dimension of Mueller matrix is high.…”
Polarization is a non-invasive optical technique and has become an emerging new tool in biomedicine studies due to its sensitivity to microstructure. The development of fast polarization techniques has enabled the application of polarimetry not only include static samples such as pathological sections, but also contain dynamic samples such as the process of tissue optical clearing (TOC). Dehydration is one of the important mechanisms of TOC which can result in the changes in tissue anisotropy, samples with different structures will show different characteristics in dehydration. In this study, three kinds of tissues with different degree of anisotropic including skeletal muscle, skin and fat are employed. We extracted and compared the temporal polarization parameters of several samples which may be related to the properties of microstructures. Monte Carlo (MC) simulation was combined to further explore the relationship between temporal polarization parameters and anisotropy of the sample. We first verified the main mechanisms of dehydration in spherecylinder birefringence model (SCBM). Then the optical properties of the microstructure in the model were changed to explore their influence on the polarization parameters. By analyzing the polarization parameters extracted from temporal Stokes images and Monte Carlo simulation, we can present polarization parameters to characterize microstructures of biological tissues.
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