Comparative transcripome data for commercial maturity and physiological maturity of ‘Royal Gala’ apple fruit under room temperature storage condition

Qi, Yingwei; Qin, Lei; Zhang, Yujie; Liu, Xiaoran; Zhou, Bin; Liu, Cuihua; Ren, Xiaolin

doi:10.1016/j.scienta.2017.07.024

Cited by 8 publications

(4 citation statements)

References 64 publications

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“…Temperature is an important factor that affects the postharvest quality of fruits. Normal-temperature storage and low-temperature storage are both important postharvest storage methods for fruits [ 33 , 34 ]. Therefore, it is of great significance to study the storage mechanism and develop a storage technology.…”

Section: Discussionmentioning

confidence: 99%

The Impact of Storage Temperature on the Development of Microbial Communities on the Surface of Blueberry Fruit

Wang

Shi

Fang

et al. 2023

Foods

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Microbial contamination is one of the main reasons for the quality deterioration of postharvest blueberries during storage. In this study, we investigated the surface microbiota of blueberry fruits stored at different temperatures via high-throughput sequencing of the 16S and ITS rRNA genes. The results indicated that the α-diversity of the microbial communities in samples stored at 4 °C was much higher than that in samples stored at 25 °C. The composition of the bacterial and fungal communities on the surface of the blueberry fruits varied at different storage temperatures. Ascomycota, Basidiomycota, Anthophyta, Chlorophyta, Proteobacteria, and Cyanobacteria were the most abundant phyla in the bacterial community. Furthermore, five preservation quality indices were measured, and the influence on the α-diversity of the bacterial community was found to be significantly weaker than that of the fungal community. Based on the prediction of the bacterial flora function, the change in blueberry quality during storage was closely related to its surface microbial effect. This study provides a theoretical basis for an understanding of the microbiota on the surface of blueberry fruits to cause fruit spoilage, and the development of a targeted inhibition technology to preserve blueberry fruits under different storage and transportation environments.

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Section: Discussionmentioning

confidence: 99%

The Impact of Storage Temperature on the Development of Microbial Communities on the Surface of Blueberry Fruit

Wang

Shi

Fang

et al. 2023

Foods

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“…RNA-seq technology has become the main choice for detecting DEGs under different biological conditions [ 24 , 29 ]. The accurate, comprehensive, and precise interpretation of such high-throughput assays relies on well-characterized reference genomes and/or transcriptomes [ 43 , 46 ]. With the development of sequencing technology, the flax genome has been updated to chromosome-level genome assembly, and five high-quality flax genomes have been published [ 67 , 68 , 69 ].…”

Section: Discussionmentioning

confidence: 99%

“…RNA-seq data analysis methods were referenced from Qi et al [ 46 ], with some modifications. Briefly, we downloaded the raw transcriptome data, PRJNA860005, from NCBI using the same tools.…”

Section: Methodsmentioning

confidence: 99%

Adaptive Response and Transcriptomic Analysis of Flax (Linum usitatissimum L.) Seedlings to Salt Stress

Chen

et al. 2022

Genes

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Soil salinity constrains agricultural development in arid regions. Flax is an economically important crop in many countries, and screening or breeding salinity-resistant flax cultivars is necessary. Based on the previous screening of flaxseed cultivars C71 (salt-sensitive) and C116 (salt-tolerant) as test materials, flax seedlings stressed with different concentrations of NaCl (0, 100, 150, 200, and 250 mmol/L) for 21 days were used to investigate the effects of salt stress on the growth characteristics, osmotic regulators, and antioxidant capacity of these flax seedlings and to reveal the adaptive responses of flax seedlings to salt stress. The results showed that plant height and root length of flax were inhibited, with C116 showing lower growth than C71. The concentrations of osmotic adjustment substances such as soluble sugars, soluble proteins, and proline were higher in the resistant material, C116, than in the sensitive material, C71, under different concentrations of salt stress. Consistently, C116 showed a better rapid scavenging ability for reactive oxygen species (ROS) and maintained higher activities of antioxidant enzymes to balance salt injury stress by inhibiting growth under salt stress. A transcriptome analysis of flax revealed that genes related to defense and senescence were significantly upregulated, and genes related to the growth and development processes were significantly downregulated under salt stress. Our results indicated that one of the important adaptations to tolerance to high salt stress is complex physiological remediation by rapidly promoting transcriptional regulation in flax.

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“…nutrients and bioactive compounds). In this regard, RNA-seq analysis of pomegranate (Ono et al, 2011), bayberry (Feng et al, 2012), sweet potato (Xie et al, 2018), zucchini (Carbajal et al, 2018), strawberry (Duan et al, 2018), and apple (Qi et al, 2017) have been completed and the results published. In addition, examples of the successful application of RNA-seq to investigate the effects of postharvest conditions on the organoleptic properties of fruits include the loss of aroma in pear (Yao et al, 2018) and sweetening in potato (Neilson et al, 2017) under low storage temperatures.…”

Section: Food Transcriptomics -An Overviewmentioning

confidence: 99%

Food Transcriptomics—An Overview

Simó¹,

García‐Cañas²

2019

Reference Module in Food Science

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Comparative transcripome data for commercial maturity and physiological maturity of ‘Royal Gala’ apple fruit under room temperature storage condition

Cited by 8 publications

References 64 publications

The Impact of Storage Temperature on the Development of Microbial Communities on the Surface of Blueberry Fruit

The Impact of Storage Temperature on the Development of Microbial Communities on the Surface of Blueberry Fruit

Adaptive Response and Transcriptomic Analysis of Flax (Linum usitatissimum L.) Seedlings to Salt Stress

Food Transcriptomics—An Overview

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