Linezolid is an antimicrobial agent for the treatment of multiresistant Gram-positive infections. We assessed the impact of linezolid on the microbiota and the emergence of resistance and investigated its relationship with plasma pharmacokinetics of the antibiotic. Twenty-eight patients were treated for the first time with linezolid administered orally (n ؍ 17) or parenterally (n ؍ 11) at 600 mg twice a day. Linezolid plasma pharmacokinetic analysis was performed on day 7. Colonization by fecal enterococci, pharyngeal streptococci, and nasal staphylococci were assessed using selective media with or without supplemental linezolid. The resistance to linezolid was characterized. The treatment led to a decrease of enterococci, staphylococci, and streptococci in the fecal (P ؍ 0.03), nasal, and pharyngeal (P < 0.01) microbiotas. The appearance of resistant strains was observed only in enterococci from the fecal microbiota between the 7th and 21st days of treatment in four patients (14.3%). The resistance was mainly due for the first time to the mutation G2447T in the 23S rRNA gene. No pharmacokinetic parameters were significantly different between the patients, regardless of the appearance of resistance. The emergence of linezolid resistance during treatment was observed only in the intestinal microbiota and unrelated to pharmacokinetic parameters. However, colonization by Grampositive bacteria was reduced as a result of treatment in all microbiotas. L inezolid, the only oxazolidinone antibiotic on the market, is an antibiotic for the treatment of multiresistant Gram-positive infections which inhibits the earliest initiation step of protein synthesis (1), while other antibiotics interfere later in the process. Linezolid resistance in Staphylococcus aureus, coagulase-negative staphylococci (CoNS), and enterococci is lower than 1% and appears stable (2, 3); however, the appearance of resistant strains could affect long-term efficacy. All resistance mechanisms described to date involve the 50S ribosomal subunit. Early reports described only nontransferable resistance (23S rRNA and ribosomal protein L3 and L4 mutations) appearing after prolonged exposure. However, the mobile cfr gene encoding a methyltransferase catalyzing the methylation of A2503 (Escherichia coli numbering) in the 23S rRNA can also confer resistance to linezolid and other antibiotics (4-8).As a rule, antibiotic use alters the endogenous microbiota and facilitates colonization by exogenous, potentially pathogenic, and/or resistant strains or selects resistant microorganisms that are already present (9). Nonetheless, the extent to which resistance occurs with linezolid treatment remains unknown. After 7 days, linezolid suppressed enterococci in the volunteers' intestinal microbiotas. Simultaneously, linezolid decreased the concentration of bifidobacteria, lactobacilli, clostridia, and Bacteroides (10). In mice, linezolid promoted the colonization of Klebsiella pneumoniae with extended-spectrum -lactamase (11). We demonstrated that in gnotobiotic m...